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Report for CCDS34073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34073.1 Public Homo sapiens 4 SLC10A7 24 110 108 CCDS HistoryNCBI Gene:84068Re-query CCDS DB by CCDS ID:34073.1Re-query CCDS DB by GeneID:84068See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335472.12 ENSP00000334594.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335472.12Link to Ensembl Protein Viewer:ENSP00000334594.8Re-query CCDS DB by Nucleotide ID:ENST00000335472Re-query CCDS DB by Protein ID:ENSP00000334594
Original member Current member NCBI NM_001029998.6 NP_001025169.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029998.6Link to Protein Sequence:NP_001025169.1Re-query CCDS DB by Nucleotide ID:NM_001029998Re-query CCDS DB by Protein ID:NP_001025169Link to BLAST:NP_001025169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025169.1 340 Q0GE19-2 340 100% 0 0

Chromosomal Locations for CCDS 34073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 146256491 146256520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146258692 146258837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146283192 146283265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146292929 146292980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146293930 146294095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146305926 146306009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146325961 146325996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146442783 146442821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146503849 146503924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146509913 146510049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146517038 146517120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146521618 146521717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAGGCTGCTGGAGAGAATGAGGAAAGACTGGTTCATGGTCGGAATAGTGCTGGCGATCGCTGGAGCTA
AACTGGAGCCGTCCATAGGGGTGAATGGGGGACCACTGAAGCCAGAAATAACTGTATCCTACATTGCTGT
TGCAACAATATTCTTTAACAGTGGACTATCATTGAAAACAGAGGAGCTGACCAGTGCTTTGGTGCATCTA
AAACTGCATCTTTTTATTCAGATCTTTACTCTTGCATTCTTCCCAGCAACAATATGGCTTTTTCTTCAGC
TTTTATCAATCACACCCATCAACGAATGGCTTTTAAAAGGTTTGCAGACAGTAGGTTGCATGCCTCCGCC
TGTGTCTTCTGCAGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGCAGCTGCAATATTTAATTCAGCC
TTTGGAAGTTTTTTGGGCATCGTTATAACACCCCTGCTCCTGCTGCTTTTTCTTGGTTCATCTTCTTCTG
TGCCTTTCACATCTATTTTTTCTCAGCTTTTTATGACTGTTGTGGTTCCTCTCATCATTGGACAGATTGT
CCGAAGATACATCAAGGATTGGCTTGAGAGAAAGAAGCCTCCTTTTGGTGCTATCAGCAGCAGTGTACTC
CTCATGATCATCTACACAACATTCTGTGACACGTTCTCTAACCCAAATATTGACCTGGATAAATTCAGCC
TTGTTCTCATACTGTTCATAATATTTTCTATCCAGCTGAGTTTTATGCTTTTAACTTTCATCTTTTCAAC
AAGGAATAATTCGGGTTTCACACCAGCAGACACAGTGGCTATCATTTTCTGTTCTACACACAAATCCCTT
ACATTGGGAATTCCGATGCTGAAGATCGTGTTTGCAGGCCATGAGCATCTCTCTTTAATATCTGTACCCT
TGCTCATCTACCACCCAGCTCAGATCCTTCTGGGAAGTGTGTTGGTGCCAACAATCAAGTCTTGGATGGT
ATCAAGGCAGAAGGGAGTGAAGCTGACAAGGCCGACAGTATAA

Translation (340 aa):
MRLLERMRKDWFMVGIVLAIAGAKLEPSIGVNGGPLKPEITVSYIAVATIFFNSGLSLKTEELTSALVHL
KLHLFIQIFTLAFFPATIWLFLQLLSITPINEWLLKGLQTVGCMPPPVSSAVILTKAVGGNEAAAIFNSA
FGSFLGIVITPLLLLLFLGSSSSVPFTSIFSQLFMTVVVPLIIGQIVRRYIKDWLERKKPPFGAISSSVL
LMIIYTTFCDTFSNPNIDLDKFSLVLILFIIFSIQLSFMLLTFIFSTRNNSGFTPADTVAIIFCSTHKSL
TLGIPMLKIVFAGHEHLSLISVPLLIYHPAQILLGSVLVPTIKSWMVSRQKGVKLTRPTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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