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Report for CCDS33734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33734.1 Public Homo sapiens 3 CTDSPL 24 110 108 CCDS HistoryNCBI Gene:10217Re-query CCDS DB by CCDS ID:33734.1Re-query CCDS DB by GeneID:10217See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33734.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273179.10 ENSP00000273179.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273179.10Link to Ensembl Protein Viewer:ENSP00000273179.5Re-query CCDS DB by Nucleotide ID:ENST00000273179Re-query CCDS DB by Protein ID:ENSP00000273179
Original member Current member NCBI NM_001008392.2 NP_001008393.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008392.2Link to Protein Sequence:NP_001008393.1Re-query CCDS DB by Nucleotide ID:NM_001008392Re-query CCDS DB by Protein ID:NP_001008393Link to BLAST:NP_001008393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008393.1 276 O15194-1 276 100% 0 0

Chromosomal Locations for CCDS 33734.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 37862200 37862278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37947057 37947211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37957111 37957143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37964571 37964672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37967826 37967882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37971407 37971499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37975709 37975894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37980742 37980867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGACGGCCCGGCCATCATCACCCAGGTGACCAACCCCAAGGAGGACGAGGGCCGGTTGCCGGGCGCGG
GCGAGAAAGCCTCCCAGTGCAACGTCAGCTTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTT
CTGCTGCTTCCGTGATTACAATGTGGAGGCCCCTCCACCCAGCAGCCCCAGTGTGCTTCCGCCACTGGTG
GAGGAGAATGGTGGGCTTCAGAAGGGTGACCAGAGGCAGGTCATTCCCATACCAAGTCCACCAGCTAAGT
ACCTTCTTCCAGAGGTGACGGTGCTTGACTATGGAAAGAAATGTGTGGTCATTGATTTAGATGAAACATT
GGTGCACAGTTCGTTTAAGCCTATTAGTAATGCTGATTTTATTGTTCCGGTTGAAATCGATGGAACTATA
CATCAGGTGTATGTGCTGAAGCGGCCACATGTGGACGAGTTCCTCCAGAGGATGGGGCAGCTTTTTGAAT
GTGTGCTCTTTACTGCCAGCTTGGCCAAGTATGCAGACCCTGTGGCTGACCTCCTAGACCGCTGGGGTGT
GTTCCGGGCCCGGCTCTTCAGAGAATCATGTGTTTTTCATCGTGGGAACTACGTGAAGGACCTGAGTCGC
CTTGGGCGGGAGCTGAGCAAAGTGATCATTGTTGACAATTCCCCTGCCTCATACATCTTCCATCCTGAGA
ATGCAGTGCCTGTGCAGTCCTGGTTCGATGACATGACGGACACGGAGCTGCTGGACCTCATCCCCTTCTT
TGAGGGCCTGAGCCGGGAGGACGACGTGTACAGCATGCTGCACAGACTCTGCAATAGGTAG

Translation (276 aa):
MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLV
EENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTI
HQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSR
LGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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