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Report for CCDS33541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33541.1 Public Homo sapiens 21 PAXBP1 24 110 108 CCDS HistoryNCBI Gene:94104Re-query CCDS DB by CCDS ID:33541.1Re-query CCDS DB by GeneID:94104See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33541.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290178.4 ENSP00000290178.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290178.4Link to Ensembl Protein Viewer:ENSP00000290178.4Re-query CCDS DB by Nucleotide ID:ENST00000290178Re-query CCDS DB by Protein ID:ENSP00000290178
Original member Current member NCBI NM_013329.4 NP_037461.2 Accepted alive Link to Nucleotide Sequence:NM_013329.4Link to Protein Sequence:NP_037461.2Re-query CCDS DB by Nucleotide ID:NM_013329Re-query CCDS DB by Protein ID:NP_037461Link to BLAST:NP_037461.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037461.2 815 Q9Y5B6-2 815 100% 0 0

Chromosomal Locations for CCDS 33541.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 32741509 32741622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32743248 32743314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32743678 32743754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32744792 32744913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32745574 32745718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32748499 32748698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32750917 32751032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32751119 32751218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32755230 32755353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32759080 32759269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32759777 32759994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32761059 32761162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32762096 32762317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32764348 32764524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32769814 32769942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32771326 32771668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGTTCCGAAAGGCCCGGCGGGTGAACGTGCGCAAGCGGAACGACTCCGAAGAGGAAGAGCGGGAACGCG
ATGAGGAGCAGGAGCCGCCGCCGTTGTTGCCGCCGCCGGGCACGGGCGAAGAGGCGGGCCCCGGTGGCGG
CGACAGGGCCCCTGGCGGGGAGTCGCTGCTGGGCCCGGGGCCGTCGCCGCCTTCCGCGCTGACCCCGGGC
CTCGGGGCTGAGGCCGGGGGCGGCTTCCCCGGCGGCGCGGAGCCCGGCAACGGGCTGAAGCCGCGCAAGA
GGCCTCGCGAGAACAAAGAGGTGCCCCGGGCCAGCCTGCTCAGCTTCCAGGACGAGGAGGAAGAAAATGA
AGAAGTTTTCAAAGTGAAGAAATCAAGTTATAGCAAAAAGATAGTAAAATTGCTCAAGAAGGAATATAAA
GAAGATCTTGAAAAATCGAAGATTAAGACAGAACTCAACTCATCAGCTGAAAGTGAACAACCTTTGGACA
AAACAGGACATGTTAAGGATACAAATCAAGAAGATGGAGTTATCATCAGTGAACATGGTGAAGATGAAAT
GGATATGGAAAGTGAAAAAGAGGAAGAAAAGCCAAAGACTGGTGGAGCTTTTTCAAATGCTTTATCTTCA
TTGAATGTTCTTCGTCCAGGAGAAATTCCAGATGCAGCTTTTATACATGCTGCAAGGAAAAAGCGCCAAA
TGGCCCGAGAATTGGGAGATTTCACTCCTCATGATAATGAGCCTGGTAAAGGCCGCCTTGTTAGAGAAGA
TGAGAATGATGCCAGTGATGATGAAGATGACGATGAGAAACGCCGGATAGTTTTTTCTGTGAAAGAAAAG
TCACAAAGACAAAAAATTGCTGAGGAAATAGGAATTGAGGGGAGTGATGATGATGCTTTAGTAACTGGAG
AACAGGATGAAGAGCTCAGCCGATGGGAACAGGAGCAGATAAGGAAAGGAATTAATATCCCTCAGGTTCA
AGCCAGTCAACCCGCAGAAGTGAATATGTACTACCAGAACACTTACCAGACAATGCCTTACGGCTCATCC
TATGGCATTCCTTATAGTTATACGGCCTATGGATCATCAGATGCCAAATCTCAAAAAACAGATAATACAG
TCCCTTTCAAAACTCCCAGTAATGAGATGACTCCCGTTACTATTGATTTGGTAAAGAAACAGCTTAAAGA
CAGGTTGGACTCCATGAAAGAATTGCACAAAACAAATCGACAGCAGCATGAGAAACATCTGCAAAGCCGA
GTGGACTCTACCAGGGCTATTGAAAGATTAGAAGGGTCTTCTGGGGGTATTGGTGAACGGTATAAATTTT
TGCAAGAAATGCGAGGGTATGTCCAAGACTTGCTTGAGTGTTTCAGTGAAAAGGTGCCACTGATTAATGA
ACTTGAATCAGCAATACATCAGCTGTACAAACAGCGAGCTTCCCGCCTTGTCCAAAGACGACAAGATGAT
ATTAAAGATGAATCTTCGGAGTTTTCAAGCCATTCAAACAAAGCTCTGATGGCACCAAATCTTGACTCCT
TTGGACGCGATCGGGCACTGTATCAAGAGCATGCAAAACGTCGCATTGCAGAGCGGGAGGCCAGGAGGAC
TCGTCGTAGACAAGCCAGAGAACAAACCGGTAAGATGGCAGATCACCTTGAAGGCCTTTCCAGTGATGAT
GAAGAAACTTCTACAGATATTACTAATTTCAATCTGGAAAAAGATCGAATTTCAAAAGAATCCGGCAAAG
TTTTTGAAGATGTCCTTGAAAGTTTCTATTCAATTGACTGTATTAAATCACAGTTTGAAGCATGGCGTTC
AAAATACTACACATCCTACAAAGATGCTTACATTGGCCTTTGTTTGCCAAAATTATTCAACCCCCTCATA
CGACTTCAGCTCCTCACTTGGACTCCTCTTGAGGCAAAATGTCGTGACTTTGAGAATATGCTGTGGTTTG
AATCTTTGCTGTTTTATGGTTGTGAAGAACGAGAGCAAGAAAAAGATGATGTAGATGTTGCCCTACTACC
TACCATTGTGGAAAAGGTGATTCTTCCTAAACTAACAGTGATAGCTGAAAATATGTGGGACCCTTTTTCT
ACAACACAGACTTCAAGAATGGTGGGAATTACACTAAAATTAATCAATGGATATCCTTCAGTAGTGAATG
CAGAAAATAAAAATACACAGGTATACCTAAAGGCACTTTTATTGAGAATGAGAAGAACTTTAGATGATGA
TGTATTTATGCCCTTATATCCCAAAAATGTCTTAGAAAATAAAAATTCTGGGCCTTACTTGTTTTTTCAA
CGACAGTTTTGGTCTTCAGTTAAGGTCATAAAACCCCCATTCCAGAGAGGGTCCTGCCCCATACCCAGAA
GGAAAGAATGCTGCTCAGAGAGGCCAAGAAGAATCTGGACGGACAGGCCTTGTGTTGTCTTCTCTTGA

Translation (815 aa):
MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPGTGEEAGPGGGDRAPGGESLLGPGPSPPSALTPG
LGAEAGGGFPGGAEPGNGLKPRKRPRENKEVPRASLLSFQDEEEENEEVFKVKKSSYSKKIVKLLKKEYK
EDLEKSKIKTELNSSAESEQPLDKTGHVKDTNQEDGVIISEHGEDEMDMESEKEEEKPKTGGAFSNALSS
LNVLRPGEIPDAAFIHAARKKRQMARELGDFTPHDNEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEK
SQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPAEVNMYYQNTYQTMPYGSS
YGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSR
VDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDD
IKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGKMADHLEGLSSDD
EETSTDITNFNLEKDRISKESGKVFEDVLESFYSIDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLI
RLQLLTWTPLEAKCRDFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFS
TTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQ
RQFWSSVKVIKPPFQRGSCPIPRRKECCSERPRRIWTDRPCVVFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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