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Report for CCDS3296.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3296.2 Public Homo sapiens 3 CLDN16 24 110 108 CCDS HistoryNCBI Gene:10686Re-query CCDS DB by CCDS ID:3296.2Re-query CCDS DB by GeneID:10686See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3296.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264734.3 ENSP00000264734.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264734.3Link to Ensembl Protein Viewer:ENSP00000264734.3Re-query CCDS DB by Nucleotide ID:ENST00000264734Re-query CCDS DB by Protein ID:ENSP00000264734
Original member Current member NCBI NM_001378492.1 NP_001365421.1 Accepted alive Link to Nucleotide Sequence:NM_001378492.1Link to Protein Sequence:NP_001365421.1Re-query CCDS DB by Nucleotide ID:NM_001378492Re-query CCDS DB by Protein ID:NP_001365421Link to BLAST:NP_001365421.1
Original member Current member NCBI NM_001378493.1 NP_001365422.1 Accepted alive Link to Nucleotide Sequence:NM_001378493.1Link to Protein Sequence:NP_001365422.1Re-query CCDS DB by Nucleotide ID:NM_001378493Re-query CCDS DB by Protein ID:NP_001365422Link to BLAST:NP_001365422.1
Original member Current member NCBI NM_006580.4 NP_006571.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006580.4Link to Protein Sequence:NP_006571.2Re-query CCDS DB by Nucleotide ID:NM_006580Re-query CCDS DB by Protein ID:NP_006571Link to BLAST:NP_006571.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365421.1 235 Q9Y5I7 235 100% 0 0
NP_001365422.1 235 Q9Y5I7 235 100% 0 0
NP_006571.2 235 Q9Y5I7 235 100% 0 0

Chromosomal Locations for CCDS 3296.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 190388330 190388443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190402337 190402439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190404762 190404926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190408314 190408505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190409903 190410036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGAGGGATCTTCTTCAATACATCGCTTGCTTCTTTGCCTTTTTCTCTGCTGGGTTTTTGATTGTGGCCA
CCTGGACTGACTGTTGGATGGTGAATGCTGATGACTCTCTGGAGGTGAGCACAAAATGCCGAGGCCTCTG
GTGGGAATGCGTCACAAATGCTTTTGATGGGATTCGCACCTGTGATGAGTACGATTCCATACTTGCGGAG
CATCCCTTGAAGCTGGTGGTAACTCGAGCGTTGATGATTACTGCAGATATTCTAGCTGGGTTTGGATTTC
TCACCCTGCTCCTTGGTCTTGACTGCGTGAAATTCCTCCCTGATGAGCCGTACATTAAAGTCCGCATCTG
CTTTGTTGCTGGAGCCACGTTACTAATAGCAGGTACCCCAGGAATCATTGGCTCTGTGTGGTATGCTGTT
GATGTGTATGTGGAACGTTCTACTTTGGTTTTGCACAATATATTTCTTGGTATCCAATATAAATTTGGTT
GGTCCTGTTGGCTCGGAATGGCTGGGTCTCTGGGTTGCTTTTTGGCTGGAGCTGTTCTCACCTGCTGCTT
ATATCTTTTTAAAGATGTTGGACCTGAGAGAAACTATCCTTATTCCTTGAGGAAAGCCTATTCAGCCGCG
GGTGTTTCCATGGCCAAGTCATACTCAGCCCCTCGCACAGAGACGGCCAAAATGTATGCTGTAGACACAA
GGGTGTAA

Translation (235 aa):
MRDLLQYIACFFAFFSAGFLIVATWTDCWMVNADDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAE
HPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAV
DVYVERSTLVLHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAA
GVSMAKSYSAPRTETAKMYAVDTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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