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Report for CCDS32817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32817.1 Public Homo sapiens 18 TPGS2 24 110 108 CCDS HistoryNCBI Gene:25941Re-query CCDS DB by CCDS ID:32817.1Re-query CCDS DB by GeneID:25941See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334295.9 ENSP00000335144.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334295.9Link to Ensembl Protein Viewer:ENSP00000335144.3Re-query CCDS DB by Nucleotide ID:ENST00000334295Re-query CCDS DB by Protein ID:ENSP00000335144
Original member Current member NCBI NM_015476.4 NP_056291.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015476.4Link to Protein Sequence:NP_056291.2Re-query CCDS DB by Nucleotide ID:NM_015476Re-query CCDS DB by Protein ID:NP_056291Link to BLAST:NP_056291.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056291.2 300 Q68CL5-2 300 100% 0 0

Chromosomal Locations for CCDS 32817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36796805 36797050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36798449 36798609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36800198 36800311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36805374 36805502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36807847 36807934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36818894 36818973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36828683 36828767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAGGAGGAGGCATCGTCCCCGGGGCTGGGCTGCAGCAAGCCGCACCTGGAGAAGCTGACCCTGGGCA
TCACGCGCATCCTAGAATCTTCCCCAGGTGTGACTGAGGTGACCATCATAGAAAAGCCTCCTGCTGAACG
TCATATGATTTCTTCCTGGGAACAAAAGAATAACTGTGTGATGCCTGAAGATGTGAAGAACTTTTACCTG
ATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTGGATGAGCACATCATTCCACTGGGAAGCATGG
CAATTAACAGCATCTCAAAACTGACTCAGCTCACCCAGTCTTCCATGTATTCACTTCCTAATGCACCCAC
TCTGGCAGACCTGGAGGACGATACACATGAAGCCAGTGATGATCAGCCAGAGAAGCCTCACTTTGACTCT
CGCAGTGTGATATTTGAGCTGGATTCATGCAATGGCAGTGGGAAAGTTTGCCTTGTCTACAAAAGTGGGA
AACCAGCATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGA
CACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACC
AGCTATGGCATTAGCCCACAGGCCAAGCAATGGTTCAGCATGTATAAACCTATCACCTACAACACAAACC
TGCTCACAGAAGAGACCGACTCCTTTGTGAATAAGCTAGATCCCAGCAAAGTGTTTAAGAGCAAGAACAA
GATCGTAATCCCAAAAAAGAAAGGGCCTGTGCAGCCTGCAGGTGGCCAGAAAGGGCCCTCAGGACCCTCC
GGTCCCTCCACTTCCTCCACTTCTAAATCCTCCTCTGGCTCTGGAAACCCCACCCGGAAGTGA

Translation (300 aa):
MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCVMPEDVKNFYL
MTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLADLEDDTHEASDDQPEKPHFDS
RSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRALYWHFLTDTFTAYYRLLITHLGLPQWQYAFT
SYGISPQAKQWFSMYKPITYNTNLLTEETDSFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPS
GPSTSSTSKSSSGSGNPTRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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