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Report for CCDS3271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3271.1 Public Homo sapiens 3 TMEM41A 24 110 108 CCDS HistoryNCBI Gene:90407Re-query CCDS DB by CCDS ID:3271.1Re-query CCDS DB by GeneID:90407See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421852.6 ENSP00000406885.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421852.6Link to Ensembl Protein Viewer:ENSP00000406885.1Re-query CCDS DB by Nucleotide ID:ENST00000421852Re-query CCDS DB by Protein ID:ENSP00000406885
Original member Current member NCBI NM_080652.4 NP_542383.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080652.4Link to Protein Sequence:NP_542383.1Re-query CCDS DB by Nucleotide ID:NM_080652Re-query CCDS DB by Protein ID:NP_542383Link to BLAST:NP_542383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542383.1 264 Q96HV5 264 100% 0 0

Chromosomal Locations for CCDS 3271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 185491537 185491757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185494623 185494761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185495154 185495315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185496828 185496981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 185498843 185498961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGCGCCCGCTTCTCGGCCTCCTTCTGGTCTTCGCCGGCTGCACCTTCGCCTTGTACTTGCTGTCGACGC
GACTGCCCCGCGGGCGGAGACTGGGCTCCACCGAGGAGGCTGGAGGCAGGTCGCTGTGGTTCCCCTCCGA
CCTGGCAGAGCTGCGGGAGCTCTCTGAGGTCCTTCGAGAGTACCGGAAGGAGCACCAGGCCTACGTGTTC
CTGCTCTTCTGCGGCGCCTACCTCTACAAACAGGGCTTTGCCATCCCCGGCTCCAGCTTCCTGAATGTTT
TAGCTGGTGCCTTGTTTGGGCCATGGCTGGGGCTTCTGCTGTGCTGTGTGTTGACCTCGGTGGGTGCCAC
ATGCTGCTACCTGCTCTCCAGTATTTTTGGCAAACAGTTGGTGGTGTCCTACTTTCCTGATAAAGTGGCC
CTGCTGCAGAGAAAGGTGGAGGAGAACAGAAACAGCTTGTTTTTTTTCTTATTGTTTTTGAGACTTTTCC
CCATGACACCAAACTGGTTCTTGAACCTCTCGGCCCCAATTCTGAACATTCCCATCGTGCAGTTCTTCTT
CTCAGTTCTTATCGGTTTGATCCCATATAATTTCATCTGTGTGCAGACAGGGTCCATCCTGTCAACCCTA
ACCTCTCTGGATGCTCTTTTCTCCTGGGACACTGTCTTTAAGCTGTTGGCCATTGCCATGGTGGCATTAA
TTCCTGGAACCCTCATTAAAAAATTTAGTCAGAAACATCTGCAATTGAATGAAACAAGTACTGCTAATCA
TATACACAGTAGAAAAGACACATGA

Translation (264 aa):
MRPLLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLREYRKEHQAYVF
LLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSIFGKQLVVSYFPDKVA
LLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQTGSILSTL
TSLDALFSWDTVFKLLAIAMVALIPGTLIKKFSQKHLQLNETSTANHIHSRKDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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