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Report for CCDS32526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32526.1 Public Homo sapiens 17 SGSM2 24 110 108 CCDS HistoryNCBI Gene:9905Re-query CCDS DB by CCDS ID:32526.1Re-query CCDS DB by GeneID:9905See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32526.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268989.8 ENSP00000268989.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268989.8Link to Ensembl Protein Viewer:ENSP00000268989.3Re-query CCDS DB by Nucleotide ID:ENST00000268989Re-query CCDS DB by Protein ID:ENSP00000268989
Original member Current member NCBI NM_014853.3 NP_055668.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014853.3Link to Protein Sequence:NP_055668.2Re-query CCDS DB by Nucleotide ID:NM_014853Re-query CCDS DB by Protein ID:NP_055668Link to BLAST:NP_055668.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055668.2 1051 O43147-2 1051 100% 0 0

Chromosomal Locations for CCDS 32526.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2337689 2337745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2343545 2343620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2361637 2361799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2362109 2362270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2362838 2362905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2362989 2363134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2363465 2363599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2364059 2364183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2364596 2364663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2364897 2365057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2365215 2365341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2367271 2367405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2371262 2371415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2372190 2372254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2372343 2372488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2372953 2373081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2373331 2373513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2375492 2375875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2376137 2376261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2376733 2376815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2376959 2377068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2377857 2377953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2379036 2379203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2379432 2379520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3156 nt):
ATGGGCAGCGCAGAGGACGCAGTCAAAGAGAAACTGCTGTGGAACGTGAAGAAGGAGGTGAAGCAAATCA
TGGAGGAGGCTGTCACCAGGAAGTTTGTGCATGAAGACAGCAGCCACATCATTGCTTTATGTGGTGCAGT
GGAGGCTTGCCTCTTGCATCAGCTGAGACGCCGTGCCGCTGGCTTCCTGCGCAGTGACAAGATGGCAGCC
CTGTTCACCAAGGTGGGGAAGACGTGCCCAGTGGCGGGGGAGATTTGCCACAAGGTACAGGAGCTGCAGC
AACAAGCAGAGGGCAGGAAACCCTCAGGGGTCAGCCAGGAGGCCCTGCGGAGACAGGGCTCAGCCAGCGG
GAAGGCCCCGGCCCTCAGCCCTCAGGCCTTGAAACACGTATGGGTACGCACGGCGCTCATCGAGAAAGTT
CTGGACAAGGTCGTGCAATACCTGGCGGAAAACTGCAGCAAGTACTACGAGAAGGAGGCACTGCTGGCAG
ACCCTGTGTTCGGCCCGATCCTGGCCTCTCTTCTAGTGGGACCCTGTGCCTTGGAATACACTAAGCTCAA
GACAGCCGATCACTACTGGACTGACCCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGTCCA
CCTACTCGCCAGGACTCCCCTGCAAAGCGCCCAGCCCTGGGGATCCGGAAACGGCACTCAAGCGGCAGCG
CGTCGGAGGACAGGCTGGCTGCCTGTGCCCGCGAGTGTGTGGAGTCCCTGCACCAGAACTCACGGACGCG
GCTGCTCTATGGCAAGAACCACGTGCTGGTGCAGCCGAAGGAGGATATGGAGGCGGTCCCTGGCTACCTC
TCCCTGCACCAGTCTGCAGAGAGCCTGACTCTGAAGTGGACCCCCAACCAGCTCATGAATGGGACTCTGG
GGGACTCCGAGCTGGAAAAGAGCGTTTACTGGGACTATGCCCTCGTGGTGCCCTTCAGCCAGGTCGTGTG
CATCCACTGCCACCAGCAAAAGAGCGGTGGCACGCTTGTGCTGGTGAGCCAGGATGGCATCCAGAGGCCG
CCGCTGCATTTCCCACAGGGAGGACACCTGCTGTCCTTTCTGTCCTGTCTGGAGAATGGGCTGCTGCCTC
GGGGACAGCTAGAGCCCCCGCTGTGGACCCAGCAAGGGAAGGGGAAAGTGTTCCCCAAGCTACGGAAACG
AAGCAGCATTCGCTCCGTGGATATGGAGGAGATGGGCACGGGGCGGGCCACCGACTATGTGTTCCGGATC
ATCTACCCCGGCCACAGGCACGAGCACATCACTATTAACTACCACCACCTAGCGGCCAGCCGCGCGGCCT
CGGTGGACGATGATGAGGAAGAGGAGGATAAACTGCACGCGATGCTCTCAATGATCTGCTCGCGGAACCT
CACAGCTCCCAATCCGATGAAAGACGCTGGTGACATGATCGAGATGCAGGGCTTTGGGCCCAGCCTGCCA
GCCTGGCACCTGGAGCCCCTGTGCAGTCAGGGCTCCTCCTGCCTCTCCTGCTCCTCCAGCAGCTCCCCAC
ATGCAACCCCCAGCCACTGTAGCTGCATCCCCGACCGGTTGCCGCTCAGGCTACTGTGTGAGAGTATGAA
GAGGCAGATCGTGTCCCGGGCCTTCTACGGCTGGCTGGCACACTGCCGCCACCTGTCCACGGTGCGGACC
CACCTGTCGGCGCTGGTGCACCATAGCGTTATCCCACCTGACCGGCCCCCGGGGGCCTCCGCGGGCCTCA
CCAAGGACGTGTGGAGCAAGTATCAGAAGGACAAAAAGAACTACAAAGAGCTGGAGCTGCTGCGGCAAGT
TTACTACGGAGGCATAGAGCACGAGATCCGCAAGGACGTCTGGCCCTTTCTGCTTGGCCACTACAAGTTC
GGCATGAGCAAGAAGGAGATGGAGCAGGTGGACGCAGTGGTGGCAGCAAGGTACCAGCAGGTGTTGGCAG
AGTGGAAGGCCTGCGAGGTGGTGGTGAGGCAGCGGGAGCGGGAGGCCCACCCAGCCACACGCACCAAGTT
CTCCTCAGGCAGCAGCATCGACAGCCACGTGCAGCGCCTCATCCACCGAGACTCCACCATCAGCAACGAT
GTGTTTATCTCAGTGGATGATCTGGAACCCCCGGAGCCCCAGGACCCTGAAGATTCCAGACCAAAACCTG
AGCAGGAAGCAGGACCCGGGACTCCGGGCACCGCCGTGGTGGAGCAGCAGCATTCCGTGGAGTTCGACTC
TCCAGACTCAGGACTGCCCTCCTCTCGCAATTACTCCGTGGCCTCGGGCATCCAGTCAAGCCTAGATGAG
GGGCAGAGCGTGGGCTTCGAAGAGGAGGACGGCGGTGGGGAGGAAGGCTCCAGTGGGCCCGGCCCTGCAG
CTCACACTTTGAGGGAGCCCCAGGATCCCAGCCAGGAGAAGCCTCAGGCCGGAGAACTGGAGGCCGGAGA
GGAGCTTGCGGCTGTGTGTGCGGCTGCCTACACTATAGAATTACTGGACACTGTGGCCTTAAACCTGCAC
CGCATAGACAAGGATGTGCAGAGGTGTGACCGCAACTACTGGTACTTCACGCCCCCCAACCTCGAGAGGC
TCAGAGACGTCATGTGCAGCTACGTGTGGGAGCACCTGGACGTGGGCTATGTGCAGGGCATGTGCGATCT
GCTGGCGCCTCTCCTGGTCACCCTCGACAATGATCAGCTGGCCTACAGCTGCTTCAGCCACCTCATGAAG
AGGATGAGCCAGAACTTCCCCAACGGGGGTGCCATGGACACCCACTTTGCCAACATGCGCTCCCTCATCC
AGATCCTGGACTCAGAGCTGTTTGAGCTGATGCATCAGAATGGAGACTACACCCACTTCTACTTCTGTTA
TCGCTGGTTCCTGCTGGATTTTAAGAGAGAACTGCTGTATGAGGATGTGTTTGCTGTGTGGGAGGTGATC
TGGGCAGCCAGGCACATCTCATCGGAGCACTTTGTCCTGTTCATCGCCCTCGCCCTGGTGGAGGCCTACC
GAGAGATCATCCGTGACAACAACATGGACTTCACTGACATCATCAAGTTTTTCAATGAACGTGCTGAGCA
TCACGATGCCCAGGAGATCCTGCGGATTGCCCGGGACCTCGTCCACAAGGTGCAGATGCTCATAGAGAAC
AAGTGA

Translation (1051 aa):
MGSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLRSDKMAA
LFTKVGKTCPVAGEICHKVQELQQQAEGRKPSGVSQEALRRQGSASGKAPALSPQALKHVWVRTALIEKV
LDKVVQYLAENCSKYYEKEALLADPVFGPILASLLVGPCALEYTKLKTADHYWTDPSADELVQRHRIRGP
PTRQDSPAKRPALGIRKRHSSGSASEDRLAACARECVESLHQNSRTRLLYGKNHVLVQPKEDMEAVPGYL
SLHQSAESLTLKWTPNQLMNGTLGDSELEKSVYWDYALVVPFSQVVCIHCHQQKSGGTLVLVSQDGIQRP
PLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQQGKGKVFPKLRKRSSIRSVDMEEMGTGRATDYVFRI
IYPGHRHEHITINYHHLAASRAASVDDDEEEEDKLHAMLSMICSRNLTAPNPMKDAGDMIEMQGFGPSLP
AWHLEPLCSQGSSCLSCSSSSSPHATPSHCSCIPDRLPLRLLCESMKRQIVSRAFYGWLAHCRHLSTVRT
HLSALVHHSVIPPDRPPGASAGLTKDVWSKYQKDKKNYKELELLRQVYYGGIEHEIRKDVWPFLLGHYKF
GMSKKEMEQVDAVVAARYQQVLAEWKACEVVVRQREREAHPATRTKFSSGSSIDSHVQRLIHRDSTISND
VFISVDDLEPPEPQDPEDSRPKPEQEAGPGTPGTAVVEQQHSVEFDSPDSGLPSSRNYSVASGIQSSLDE
GQSVGFEEEDGGGEEGSSGPGPAAHTLREPQDPSQEKPQAGELEAGEELAAVCAAAYTIELLDTVALNLH
RIDKDVQRCDRNYWYFTPPNLERLRDVMCSYVWEHLDVGYVQGMCDLLAPLLVTLDNDQLAYSCFSHLMK
RMSQNFPNGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVI
WAARHISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERAEHHDAQEILRIARDLVHKVQMLIEN
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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