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Report for CCDS3208.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3208.2 Public Homo sapiens 3 LRRC34 24 110 108 CCDS HistoryNCBI Gene:151827Re-query CCDS DB by CCDS ID:3208.2Re-query CCDS DB by GeneID:151827See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3208.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3208.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522526.6 ENSP00000429278.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522526.6Link to Ensembl Protein Viewer:ENSP00000429278.2Re-query CCDS DB by Nucleotide ID:ENST00000522526Re-query CCDS DB by Protein ID:ENSP00000429278
Original member Current member NCBI NM_153353.5 NP_699184.2 Accepted alive Link to Nucleotide Sequence:NM_153353.5Link to Protein Sequence:NP_699184.2Re-query CCDS DB by Nucleotide ID:NM_153353Re-query CCDS DB by Protein ID:NP_699184Link to BLAST:NP_699184.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699184.2 432 Q8IZ02-3 432 100% 0 0

Chromosomal Locations for CCDS 3208.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 169793635 169793838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169795485 169795611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169796214 169796369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169796745 169796899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169804053 169804181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169806848 169806931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169807426 169807490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169807588 169807709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169808628 169808745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 169812410 169812548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGCAGCGCAGCCGCCGCGGCCAGTGGGTGAGAGGAGCATGGGGAGCTCCCGGGAGGCCGCCCGTGCGC
CGGCCAGGTCCCCGGCTTGGGCCTCCACTCAGGCCAGTACTCCGGGCGCGGCCCTGGCGGTCCAGCGCGA
ATCTCCAGAATCTGGTCTCCAGAAACATTATTCTAATCTGTGTATGGAAAAATCCCAGAAAATTAATCCT
TTTATATTGCATATACTCCAAGAAGTGGATGAAGAAATTAAAAAGGGGCTAGCAGCAGGAATCACATTAA
ACATTGCTGGTAACAATCGCTTAGTGCCAGTAGAAAGAGTTACAGGTGAAGATTTTTGGATTCTTTCCAA
AATTTTAAAGAATTGTCTGTATATTAATGGTTTGGATGTTGGATATAACCTTCTATGTGATGTTGGTGCA
TACTATGCTGCGAAACTGCTTCAGAAACAACTTAATCTCATTTACTTAAACCTCATGTTTAATGATATTG
GGCCCGAAGGTGGAGAATTGATTGCTAAAGTGCTACATAAGAATCGGACTCTGAAATACCTAAGAATGAC
TGGAAACAAAATTGAAAATAAAGGTGGAATGTTTTTTGCTGCAATGCTGCAAATTAATTCATCATTAGAG
AAATTAGATCTGGGTGACTGTGATCTGGAAGAGTCTACAGTCCATGTAGGCCGCATGTTGAAAGAAAATC
ACTGTCTTGTTGCACTACACATGTGTAAGCATGATATAAAAAACAGTGGTATACAACAGTTATGTGATGC
ACTGTATCTGAACAGTAGCCTGCGCTACCTTGATGTCAGCTGCAACAAAATAACTCATGATGGAATGGTG
TATTTGGCTGATGTACTGAAAAGCAACACTACCCTGGAAGTAATAGATCTTTCCTTTAACAGAATAGAAA
ATGCAGGCGCAAACTATCTCAGTGAAACTCTTACTTCACACAACAGGAGTCTTAAAGCGTTGTCAGTAGT
CAGCAACAACATAGAGGGAGAAGGACTTGTTGCACTTTCACAATCAATGAAAACAAATCTCACTTTCTCT
CATATCTACATTTGGGGAAACAAATTTGATGAGGCTACGTGTATAGCATATTCAGACTTAATTCAAATGG
GTTGTCTAAAACCAGACAATACAGATGTGGAGCCATTTGTGGTAGATGGACGTGTATATCTTGCAGAAGT
CTCCAATGGCCTTAAAAAGCATTATTATTGGACATCAACTTATGGAGAATCTTATGACCACTCATCTAAT
GCAGGTTTTGCTCTTGTTCCAGTAGGTCAACAGCCATGA

Translation (432 aa):
MAAQPPRPVGERSMGSSREAARAPARSPAWASTQASTPGAALAVQRESPESGLQKHYSNLCMEKSQKINP
FILHILQEVDEEIKKGLAAGITLNIAGNNRLVPVERVTGEDFWILSKILKNCLYINGLDVGYNLLCDVGA
YYAAKLLQKQLNLIYLNLMFNDIGPEGGELIAKVLHKNRTLKYLRMTGNKIENKGGMFFAAMLQINSSLE
KLDLGDCDLEESTVHVGRMLKENHCLVALHMCKHDIKNSGIQQLCDALYLNSSLRYLDVSCNKITHDGMV
YLADVLKSNTTLEVIDLSFNRIENAGANYLSETLTSHNRSLKALSVVSNNIEGEGLVALSQSMKTNLTFS
HIYIWGNKFDEATCIAYSDLIQMGCLKPDNTDVEPFVVDGRVYLAEVSNGLKKHYYWTSTYGESYDHSSN
AGFALVPVGQQP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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