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Report for CCDS31925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31925.1 Public Homo sapiens 12 RIMBP2 24 110 108 CCDS HistoryNCBI Gene:23504Re-query CCDS DB by CCDS ID:31925.1Re-query CCDS DB by GeneID:23504See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31925.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261655.8 ENSP00000261655.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261655.8Link to Ensembl Protein Viewer:ENSP00000261655.4Re-query CCDS DB by Nucleotide ID:ENST00000261655Re-query CCDS DB by Protein ID:ENSP00000261655
Original member Current member NCBI NM_015347.5 NP_056162.4 Accepted alive Link to Nucleotide Sequence:NM_015347.5Link to Protein Sequence:NP_056162.4Re-query CCDS DB by Nucleotide ID:NM_015347Re-query CCDS DB by Protein ID:NP_056162Link to BLAST:NP_056162.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056162.4 1052 O15034-1 1052 100% 0 0

Chromosomal Locations for CCDS 31925.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 130399135 130399161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130399679 130399813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130406172 130406243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130407726 130407829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130412619 130412787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130414125 130414306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130422453 130422561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130428179 130428337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130434734 130434880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130436842 130437291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130438365 130438516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130441848 130442660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130445160 130445269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130450200 130450276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130451195 130451340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130456496 130456700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130478912 130479013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3159 nt):
ATGCGAGAGGCGGCTGAACGGCGGCAGCAGCTGCAGTTGGAGCATGACCAGGCCCTGGCTGTTCTCAGTG
CCAAGCAGCAGGAAATTGACCTTCTGCAGAAGTCCAAGGTTCGAGAGCTGGAAGAGAAATGCCGGACTCA
AAGTGAGCAGTTCAACCTGCTGTCCCGGGACCTGGAGAAGTTCCGGCAGCACGCTGGCAAGATTGACCTG
CTGGGTGGCAGCGCGGTGGCCCCCCTGGACATCTCCACGGCCCCCAGCAAGCCTTTCCCACAGTTCATGA
ATGGCCTAGCCACCTCCCTCGGCAAAGGTCAGGAGAGCGCTATTGGAGGCAGCTCTGCGATCGGTGAATA
TATCCGGCCCCTTCCGCAGCCTGGTGACAGGCCGGAGCCTCTGTCCGCCAAGCCCACCTTCCTGTCGAGA
TCCGGTAGCGCAAGATGCAGATCTGAGTCAGACATGGAGAATGAACGGAATTCCAATACCTCCAAGCAGA
GATACTCGGGGAAGGTCCACCTCTGTGTTGCCCGCTATAGTTACAACCCCTTCGATGGACCGAACGAGAA
CCCCGAAGCTGAGCTGCCCCTCACGGCGGGAAAATACCTCTACGTCTATGGAGACATGGATGAGGATGGG
TTCTATGAAGGAGAGCTCCTCGATGGCCAGAGGGGTCTGGTGCCCTCCAACTTCGTGGACTTTGTGCAGG
ACAACGAGTCGCGGTTGGCAAGCACGCTGGGGAACGAGCAGGATCAGAACTTCATCAACCATTCCGGCAT
CGGCCTGGAGGGAGAGCACATCCTGGACCTCCACTCCCCAACCCACATAGATGCGGGCATCACCGACAAC
AGTGCCGGGACCCTGGACGTGAACATCGACGACATCGGAGAAGACATCGTGCCTTACCCTAGAAAAATCA
CCCTCATCAAACAACTCGCCAAAAGTGTTATTGTGGGCTGGGAGCCCCCGGCGGTGCCACCAGGATGGGG
AACGGTGAGCAGCTACAACGTCCTGGTGGACAAGGAGACACGCATGAACCTCACGCTGGGGAGCAGAACT
AAAGCCCTCATCGAGAAGCTCAACATGGCAGCCTGCACCTACCGCATCTCCGTGCAGTGCGTCACCAGCA
GGGGCAGCTCGGATGAGCTGCAGTGCACGCTGCTGGTGGGCAAGGACGTGGTGGTGGCCCCCTCCCACCT
GCGGGTGGACAACATCACGCAGATCTCCGCCCAGCTCTCCTGGCTACCCACCAACAGCAACTACAGCCAC
GTCATCTTCCTCAACGAGGAGGAGTTCGACATCGTCAAGGCCGCCAGGTACAAGTACCAGTTCTTCAATC
TCAGGCCCAACATGGCCTATAAGGTGAAGGTTCTGGCCAAACCCCACCAGATGCCGTGGCAGCTCCCGCT
GGAGCAAAGGGAGAAGAAGGAGGCCTTTGTGGAGTTCTCCACGTTGCCTGCAGGACCCCCAGCACCCCCA
CAAGATGTTACCGTCCAGGCTGGGGTGACCCCCGCCACCATCCGGGTCTCCTGGAGACCACCTGTGCTGA
CGCCCACCGGGCTGTCCAATGGCGCAAACGTTACCGGCTACGGCGTGTATGCCAAAGGGCAGAGGGTGGC
TGAAGTCATCTTCCCCACGGCAGACAGCACGGCCGTGGAGCTTGTGCGGCTGCGGAGCCTGGAGGCCAAG
GGCGTGACCGTGCGGACCCTCTCCGCCCAGGGCGAGTCCGTGGACTCTGCAGTTGCTGCCGTTCCCCCCG
AGCTCCTGGTGCCTCCTACCCCCCACCCGAGACCTGCACCCCAATCAAAGCCATTAGCAAGTTCTGGAGT
CCCCGAAACCAAAGACGAGCACCTGGGTCCCCACGCCAGGATGGATGAGGCCTGGGAGCAGAGCCGTGCA
CCTGGCCCTGTGCATGGGCACATGCTGGAGCCGCCCGTGGGCCCCGGAAGGCGGTCGCCCTCACCCAGCC
GCATCCTGCCACAGCCACAGGGCACCCCGGTGTCCACCACCGTCGCCAAGGCCATGGCCCGGGAGGCCGC
GCAGAGGGTGGCCGAGAGCAGCAGGTTAGAGAAAAGGAGCGTCTTCCTAGAGAGAAGCAGCGCGGGGCAG
TACGCCGCCTCAGACGAGGAGGACGCCTATGACTCTCCAGACTTCAAGAGGAGGGGCGCCTCGGTGGACG
ACTTCCTGAAAGGCTCTGAACTTGGCAAGCAGCCGCACTGTTGCCATGGAGACGAGTACCACACAGAGAG
CAGCCGGGGGTCTGACCTCTCAGACATCATGGAGGAGGACGAGGAGGAGCTGTATTCTGAAATGCAGCTG
GAAGATGGGGGAAGGAGGCGGCCCAGCGGCACGTCCCACAATGCCCTCAAGATTTTAGGGAACCCAGCCT
CTGCAGGACGGGTGGATCACATGGGCCGGAGGTTTCCCCGTGGCAGCGCTGGTCCTCAGAGGTCCCGGCC
CGTGACAGTCCCATCCATCGACGATTACGGGCGAGACCGCCTTTCTCCAGACTTCTATGAAGAGTCAGAA
ACTGACCCTGGTGCCGAAGAGCTCCCGGCCCGGATCTTTGTGGCTCTCTTTGACTACGACCCGCTCACCA
TGTCCCCAAACCCAGATGCTGCAGAGGAGGAGCTTCCCTTTAAAGAAGGCCAGATCATCAAGGTTTATGG
TGATAAAGACGCTGATGGATTCTACCGTGGGGAAACCTGTGCCCGGCTTGGCCTTATTCCTTGTAACATG
GTCTCTGAGATACAAGCAGATGATGAGGAGATGATGGATCAGCTTCTTAGACAGGGCTTTCTCCCTCTGA
ATACACCTGTGGAGAAAATAGAGAGAAGCAGGAGAAGTGGCAGGCGTCATTCGGTATCGACGCGGAGAAT
GGTGGCCCTGTATGACTACGACCCCAGAGAAAGCTCGCCCAACGTCGATGTCGAGGCCGAACTTACATTT
TGCACAGGAGATATTATTACAGTTTTTGGTGAAATTGATGAAGATGGATTTTATTATGGGGAGCTGAATG
GGCAGAAAGGCCTTGTGCCCTCAAACTTCTTGGAAGAAGTGCCTGATGACGTAGAAGTCTATCTTTCTGA
TGCTCCATCCCACTACTCTCAAGATACGCCAATGCGCTCAAAGGCAAAAAGGAAGAAGAGTGTTCATTTC
ACACCTTAA

Translation (1052 aa):
MREAAERRQQLQLEHDQALAVLSAKQQEIDLLQKSKVRELEEKCRTQSEQFNLLSRDLEKFRQHAGKIDL
LGGSAVAPLDISTAPSKPFPQFMNGLATSLGKGQESAIGGSSAIGEYIRPLPQPGDRPEPLSAKPTFLSR
SGSARCRSESDMENERNSNTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDG
FYEGELLDGQRGLVPSNFVDFVQDNESRLASTLGNEQDQNFINHSGIGLEGEHILDLHSPTHIDAGITDN
SAGTLDVNIDDIGEDIVPYPRKITLIKQLAKSVIVGWEPPAVPPGWGTVSSYNVLVDKETRMNLTLGSRT
KALIEKLNMAACTYRISVQCVTSRGSSDELQCTLLVGKDVVVAPSHLRVDNITQISAQLSWLPTNSNYSH
VIFLNEEEFDIVKAARYKYQFFNLRPNMAYKVKVLAKPHQMPWQLPLEQREKKEAFVEFSTLPAGPPAPP
QDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTADSTAVELVRLRSLEAK
GVTVRTLSAQGESVDSAVAAVPPELLVPPTPHPRPAPQSKPLASSGVPETKDEHLGPHARMDEAWEQSRA
PGPVHGHMLEPPVGPGRRSPSPSRILPQPQGTPVSTTVAKAMAREAAQRVAESSRLEKRSVFLERSSAGQ
YAASDEEDAYDSPDFKRRGASVDDFLKGSELGKQPHCCHGDEYHTESSRGSDLSDIMEEDEEELYSEMQL
EDGGRRRPSGTSHNALKILGNPASAGRVDHMGRRFPRGSAGPQRSRPVTVPSIDDYGRDRLSPDFYEESE
TDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNM
VSEIQADDEEMMDQLLRQGFLPLNTPVEKIERSRRSGRRHSVSTRRMVALYDYDPRESSPNVDVEAELTF
CTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVPDDVEVYLSDAPSHYSQDTPMRSKAKRKKSVHF
TP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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