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Report for CCDS31198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31198.1 Public Homo sapiens 10 VSTM4 24 110 108 CCDS HistoryNCBI Gene:196740Re-query CCDS DB by CCDS ID:31198.1Re-query CCDS DB by GeneID:196740See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31198.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332853.9 ENSP00000331062.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332853.9Link to Ensembl Protein Viewer:ENSP00000331062.3Re-query CCDS DB by Nucleotide ID:ENST00000332853Re-query CCDS DB by Protein ID:ENSP00000331062
Original member Current member NCBI NM_001031746.5 NP_001026916.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031746.5Link to Protein Sequence:NP_001026916.2Re-query CCDS DB by Nucleotide ID:NM_001031746Re-query CCDS DB by Protein ID:NP_001026916Link to BLAST:NP_001026916.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026916.2 320 Q8IW00-1 320 100% 0 0

Chromosomal Locations for CCDS 31198.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 49019650 49019775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49046983 49047044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49048478 49048584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49064703 49064736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49077219 49077326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49085955 49086023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49107594 49107995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49115431 49115485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGCGGCTGCTGGCACTGGCGGCGGCCGCGCTGCTGGCGCGGGCTCCGGCTCCGGAGGTCTGTGCGGCCC
TCAATGTCACTGTGTCCCCGGGGCCCGTGGTTGACTACCTGGAGGGGGAGAATGCCACTCTCCTCTGCCA
CGTCTCCCAGAAAAGGCGGAAGGACAGCTTGCTGGCCGTGCGCTGGTTCTTTGCACACTCCTTCGACTCC
CAGGAGGCCTTGATGGTGAAGATGACCAAGCTCCGGGTGGTGCAGTACTATGGGAATTTCAGCCGCAGCG
CCAAACGGCGGAGGCTGCGCCTGCTGGAGGAGCAGCGGGGGGCGCTCTACAGGCTCTCCGTCTTGACACT
GCAGCCCTCCGATCAAGGGCATTACGTCTGCAGAGTCCAGGAAATCAGCAGGCACAGGAACAAGTGGACG
GCCTGGTCCAATGGCTCCTCAGCCACGGAAATGAGAGTCATTTCCCTCAAAGCTTCTGAAGAGTCATCCT
TTGAGAAAACAAAAGAGACTTGGGCATTTTTTGAAGATCTCTATGTGTATGCTGTCCTCGTGTGCTGCGT
GGGGATCCTCAGCATTCTGCTCTTCATGCTGGTCATCGTCTGGCAGTCTGTGTTTAACAAGCGGAAATCC
AGAGTGAGACATTATTTGGTGAAATGCCCTCAGAACAGCTCAGGGGAGACTGTCACTAGCGTGACCAGCT
TGGCCCCACTACAGCCCAAGAAGGGCAAGAGGCAGAAGGAGAAGCCTGACATTCCTCCCGCAGTCCCTGC
CAAAGCTCCGATAGCCCCCACGTTCCATAAACCGAAGCTGCTGAAACCACAGAGAAAAGTCACGCTGCCA
AAGATTGCTGAGGAAAACTTAACCTATGCCGAACTGGAGCTGATCAAACCCCACCGGGCTGCCAAAGGCG
CCCCCACCAGCACTGTCTACGCCCAGATCCTCTTCGAGGAGAACAAGCTGTAG

Translation (320 aa):
MRLLALAAAALLARAPAPEVCAALNVTVSPGPVVDYLEGENATLLCHVSQKRRKDSLLAVRWFFAHSFDS
QEALMVKMTKLRVVQYYGNFSRSAKRRRLRLLEEQRGALYRLSVLTLQPSDQGHYVCRVQEISRHRNKWT
AWSNGSSATEMRVISLKASEESSFEKTKETWAFFEDLYVYAVLVCCVGILSILLFMLVIVWQSVFNKRKS
RVRHYLVKCPQNSSGETVTSVTSLAPLQPKKGKRQKEKPDIPPAVPAKAPIAPTFHKPKLLKPQRKVTLP
KIAEENLTYAELELIKPHRAAKGAPTSTVYAQILFEENKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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