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Report for CCDS30606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30606.1 Public Homo sapiens 1 DNAJC16 24 110 108 CCDS HistoryNCBI Gene:23341Re-query CCDS DB by CCDS ID:30606.1Re-query CCDS DB by GeneID:23341See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375847.8 ENSP00000365007.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375847.8Link to Ensembl Protein Viewer:ENSP00000365007.3Re-query CCDS DB by Nucleotide ID:ENST00000375847Re-query CCDS DB by Protein ID:ENSP00000365007
Original member Current member NCBI NM_015291.4 NP_056106.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015291.4Link to Protein Sequence:NP_056106.1Re-query CCDS DB by Nucleotide ID:NM_015291Re-query CCDS DB by Protein ID:NP_056106Link to BLAST:NP_056106.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056106.1 782 Q9Y2G8-1 782 100% 0 0

Chromosomal Locations for CCDS 30606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15529106 15529272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15534237 15534303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15536475 15536814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15544399 15544583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15546767 15546871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15548270 15548428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15559526 15559656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15562142 15562325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15563929 15564111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15564283 15564359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15565919 15565999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15566082 15566180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15567099 15567269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15567778 15568177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGGAAGTGAGAAAGTTGAGCATTTCCTGGCAGTTCTTGATAGTTCTGGTTCTGATCCTGCAAATTCTGT
CTGCGTTGGATTTTGACCCATACAGAGTCCTAGGGGTCAGCCGAACAGCCAGTCAGGCTGATATTAAAAA
GGCTTATAAGAAGCTCGCCCGGGAATGGCATCCTGACAAAAACAAAGATCCTGGAGCAGAAGACAAGTTC
ATTCAAATCAGTAAGGCTTACGAGATTCTTTCAAATGAAGAAAAGAGATCAAATTATGATCAATATGGAG
ACGCTGGAGAGAACCAGGGCTACCAGAAGCAGCAACAGCAGCGAGAGTATCGCTTCCGCCATTTCCATGA
AAATTTTTATTTTGATGAATCCTTTTTTCACTTCCCTTTTAATTCTGAACGGCGGGACTCAATTGACGAA
AAGTATTTATTGCACTTTTCACATTATGTGAATGAAGTGGTTCCAGATAGCTTCAAGAAACCCTACCTCA
TCAAGATCACCTCCGATTGGTGCTTTAGCTGCATTCATATCGAGCCTGTGTGGAAAGAAGTCATTCAAGA
ACTGGAAGAATTGGGTGTAGGAATTGGCGTGGTCCATGCTGGGTATGAGAGACGCCTGGCCCATCACCTA
GGGGCACACAGCACGCCCTCTATCCTAGGAATCATTAACGGGAAAATCTCCTTCTTCCACAATGCAGTTG
TCCGTGAAAATCTGCGACAATTTGTAGAAAGTCTTCTTCCAGGGAACTTGGTGGAGAAAGTTACAAATAA
AAATTACGTCAGATTCCTCTCTGGCTGGCAGCAAGAGAATAAGCCTCATGTCCTTCTGTTTGACCAAACG
CCCATTGTGCCACTGTTATACAAGTTGACTGCCTTTGCATACAAAGATTATTTATCATTTGGATATGTAT
ATGTGGGTTTGAGAGGGACGGAAGAGATGACAAGGCGGTACAACATCAATATCTACGCCCCTACCCTCTT
GGTCTTTAAAGAACATATAAACAGGCCTGCCGATGTTATCCAGGCCCGAGGTATGAAGAAGCAAATCATT
GACGACTTCATCACCCGAAACAAATATCTATTGGCAGCCAGGCTCACCAGCCAGAAGTTGTTCCATGAAC
TCTGCCCTGTGAAACGGTCGCATCGACAGAGGAAGTACTGTGTGGTTTTATTGACTGCTGAGACTACCAA
GTTGAGCAAACCCTTTGAGGCTTTCCTGTCCTTTGCCCTGGCAAACACTCAAGACACAGTGAGATTTGTG
CATGTCTACAGCAATCGGCAGCAGGAGTTTGCCGACACCTTACTACCAGACAGTGAGGCGTTTCAAGGGA
AATCAGCGGTGTCTATTTTAGAAAGGCGCAACACAGCAGGAAGGGTGGTGTATAAAACCCTGGAAGACCC
TTGGATTGGGAGTGAGAGTGACAAATTTATCCTCTTGGGCTATCTCGACCAGCTGCGTAAAGATCCAGCT
CTTCTGTCCTCTGAAGCAGTGCTTCCTGACCTGACCGATGAACTTGCCCCTGTTTTTCTCCTTCGATGGT
TCTACTCTGCTTCTGACTACATCTCAGACTGCTGGGATAGCATTTTTCACAACAACTGGAGGGAAATGAT
GCCCCTGCTGTCCCTGATCTTCTCTGCCCTCTTCATCCTCTTCGGCACTGTCATCGTTCAGGCTTTCAGC
GACTCTAATGATGAGCGAGAGTCAAGCCCTCCAGAAAAAGAGGAAGCCCAAGAGAAGACTGGGAAAACTG
AGCCAAGCTTCACCAAAGAAAACAGCAGCAAGATTCCTAAAAAAGGCTTTGTGGAGGTAACTGAACTCAC
AGATGTAACATACACCAGTAACTTGGTACGTCTGAGGCCAGGCCACATGAATGTGGTCCTCATCCTGTCG
AATTCTACCAAGACCAGCCTACTACAGAAATTTGCTTTGGAGGTCTACACATTTACTGGGAGCAGCTGCC
TACACTTCTCCTTCCTGAGTCTAGATAAACACAGAGAATGGCTAGAATACTTACTAGAATTTGCTCAAGA
TGCAGCTCCAATCCCAAACCAATATGATAAGCATTTCATGGAGCGTGACTACACTGGTTATGTACTGGCT
CTGAATGGCCACAAGAAATACTTCTGCCTCTTCAAGCCCCAAAAGACAGTCGAAGAGGAGGAAGCCATAG
GGTCGTGCAGTGATGTTGACTCTTCCCTCTACCTGGGTGAATCTCGAGGGAAACCTTCCTGTGGCCTTGG
ATCCAGGCCCATCAAAGGAAAGTTGAGCAAGCTCTCTTTATGGATGGAACGCCTGCTGGAGGGCTCCTTA
CAGAGGTTTTATATCCCATCATGGCCTGAACTAGACTGA

Translation (782 aa):
MEVRKLSISWQFLIVLVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKF
IQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHENFYFDESFFHFPFNSERRDSIDE
KYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEELGVGIGVVHAGYERRLAHHL
GAHSTPSILGIINGKISFFHNAVVRENLRQFVESLLPGNLVEKVTNKNYVRFLSGWQQENKPHVLLFDQT
PIVPLLYKLTAFAYKDYLSFGYVYVGLRGTEEMTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQII
DDFITRNKYLLAARLTSQKLFHELCPVKRSHRQRKYCVVLLTAETTKLSKPFEAFLSFALANTQDTVRFV
HVYSNRQQEFADTLLPDSEAFQGKSAVSILERRNTAGRVVYKTLEDPWIGSESDKFILLGYLDQLRKDPA
LLSSEAVLPDLTDELAPVFLLRWFYSASDYISDCWDSIFHNNWREMMPLLSLIFSALFILFGTVIVQAFS
DSNDERESSPPEKEEAQEKTGKTEPSFTKENSSKIPKKGFVEVTELTDVTYTSNLVRLRPGHMNVVLILS
NSTKTSLLQKFALEVYTFTGSSCLHFSFLSLDKHREWLEYLLEFAQDAAPIPNQYDKHFMERDYTGYVLA
LNGHKKYFCLFKPQKTVEEEEAIGSCSDVDSSLYLGESRGKPSCGLGSRPIKGKLSKLSLWMERLLEGSL
QRFYIPSWPELD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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