NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3037.1 Public Homo sapiens 3 CFAP100 24 110 108 CCDS HistoryNCBI Gene:348807Re-query CCDS DB by CCDS ID:3037.1Re-query CCDS DB by GeneID:348807See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3037.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352312.6 ENSP00000344749.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000352312.6Link to Ensembl Protein Viewer:ENSP00000344749.1Re-query CCDS DB by Nucleotide ID:ENST00000352312Re-query CCDS DB by Protein ID:ENSP00000344749
Original member Current member NCBI NM_182628.3 NP_872434.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182628.3Link to Protein Sequence:NP_872434.2Re-query CCDS DB by Nucleotide ID:NM_182628Re-query CCDS DB by Protein ID:NP_872434Link to BLAST:NP_872434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872434.2 611 Q494V2-1 611 100% 0 0

Chromosomal Locations for CCDS 3037.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126396001 126396049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126407172 126407252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126414085 126414179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126416316 126416508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126418458 126418525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126418611 126418774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126419076 126419156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126419637 126419818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126419980 126420021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126420103 126420229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126423325 126423376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126423493 126423644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126433069 126433204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126434176 126434381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126435559 126435652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126436291 126436404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGTCTGAGATACCGTCCACTATAGTCTCCAAGAACATGACCAATGACAAGAACAGCCTGGAATCCATGA
ACATCAGCTCTTCTTCAAGCACTGAAGAGAACCCAAAGAAACAGGCAAGAAAAAACGAAGAACATGGTCC
TGACCCTTCAGCGAACCCTTTCCACTTATCTGGGGATGTGGATTTCTTCTTGCTCAGAGATCAGGAGCGG
AATAAGGCTCTCTCCGAACGGCAGCAGCAGAAGACGATGCGGGTGCACCAGAAGATGACCTACTCCTCGA
AAGTGTCGGCTAAGCACACCAGCCTGCGGCGGCAGCTGCAGCTGGAGGACAAGCAGGAGGACCTGGAGGC
GCGCGCCGAGGCCGAGCATCAGCGCGCCTTCCGCGACTACACGACCTGGAAGCTCACCTTGACCAAAGAA
AAGAATGTGGAGCCTGAGAACATGAGTGGCTACATTAAGCAGAAGCGGCAAATGTTCCTCCTCCAGTATG
CCCTGGATGTCAAGCGGAGAGAGATCCAGCGGCTGGAGACGCTGGCGACCAAAGAGGAGGCCAGGCTGGA
GCGGGCCGAGAAATCCCTGGAGAAGGACGCCGCCTTGTTCGACGAGTTCGTCAGGGAGAATGACTGCAGC
TCCGTGCAGGCCATGAGAGCGGCTGAGAAGGAGACCAAAGCCAAGATAGAGAAGATCCTTGAGATCCGGG
ACCTCACCACCCAGATTGTTAATATCAAAAGTGAGATCTCCAGATTTGAAGACACTCTGAAGCATTACAA
GGTCTATAAGGATTTCCTATACAAGCTGTCGCCCAAGGAGTGGCTTGAAGAACAGGAAAAGAAACACTCG
TTTCTCAAAAAGGCCAAGGAGGTCTCCGAGGCTTCCAAAGAGAGCAGTGTTAACTCCACACCAGGGGACA
AAGGACCAGGGATCAAGGGCAAGGCGAGCTCCATGTGGGCCAAAGAGGGTCAGGGTACAAAGAAGCCCTG
GAGGTTTCTGCAGACGATGCGGCTGGGGCGGAGCCCGTCTTACCTGAGCAGCCCCCAGCAAGGCAGCCAG
CCCAGCGAGTCCAGCGGTGGCGACTCCAGAGGGTCGAACTCTCCCATCCCCCCCACGCAGGAGGACACCG
ACAGCGATGGGGAGGAACCACAGCTGTACTTCACGGAGCCCCAGCAGCTCCTGGATGTCTTCCGAGAGCT
GGAGGAGCAGAACCTGTCGCTGATCCAGAACAGCCAGGAGACGGAGAAGACCCTGGAGGAGCTGAGCCAC
ACCCTGAAACACACCCAGATCCGCATGGACAGGGAGGTCAACCAGCTGAAGCAGTGGGTCACCACAATGA
TGATGTCCATCACCAAGGAGGAGGACACAGCAGCTGAGCTGGAGCTCAAAGCCCGAGTCTTCCACTTCGG
CGAGTACAAGGGCGATCAGCAGGATAAGCTGCTAGAGAGCCTGAACTGCAAGGTGCTGGATGTGTACCGG
CACTGCACCGGCACCCAGCAGGAGGCCAACCTGGGCACCGTGCAGATGCTGACCATCATTGAGCACCAGC
TGGATGAGCTGCTAGAGAACCTGGAGCACGTGCCCCAGGTCAAGATCGAGCAGGCCGAGAGGGCAAAGGA
GAAGGAGCGGCGCATCAGACTTCGAGAAGAGAAGCTCCAGATGCAAAAGATCCTACAGGAGGAGCATCTG
CAGCGGGCCCGGGCGCGCGCCCAGGCTGAGATCAAGAAGAAGAGAGGCAGGACACTGGTATGCCGCTCAC
GACCCCCAGCCCACAGGATCAAACAACAGTCTGAGCACACACTGATGGACAAGGAGGAGGAGGAGCTGCT
ATTTTTCTTTACTTAA

Translation (611 aa):
MSEIPSTIVSKNMTNDKNSLESMNISSSSSTEENPKKQARKNEEHGPDPSANPFHLSGDVDFFLLRDQER
NKALSERQQQKTMRVHQKMTYSSKVSAKHTSLRRQLQLEDKQEDLEARAEAEHQRAFRDYTTWKLTLTKE
KNVEPENMSGYIKQKRQMFLLQYALDVKRREIQRLETLATKEEARLERAEKSLEKDAALFDEFVRENDCS
SVQAMRAAEKETKAKIEKILEIRDLTTQIVNIKSEISRFEDTLKHYKVYKDFLYKLSPKEWLEEQEKKHS
FLKKAKEVSEASKESSVNSTPGDKGPGIKGKASSMWAKEGQGTKKPWRFLQTMRLGRSPSYLSSPQQGSQ
PSESSGGDSRGSNSPIPPTQEDTDSDGEEPQLYFTEPQQLLDVFRELEEQNLSLIQNSQETEKTLEELSH
TLKHTQIRMDREVNQLKQWVTTMMMSITKEEDTAAELELKARVFHFGEYKGDQQDKLLESLNCKVLDVYR
HCTGTQQEANLGTVQMLTIIEHQLDELLENLEHVPQVKIEQAERAKEKERRIRLREEKLQMQKILQEEHL
QRARARAQAEIKKKRGRTLVCRSRPPAHRIKQQSEHTLMDKEEEELLFFFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH