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Report for CCDS30243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30243.1 Public Mus musculus X Pls3 23 108 98 CCDS HistoryNCBI Gene:102866Re-query CCDS DB by CCDS ID:30243.1Re-query CCDS DB by GeneID:102866See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033547.13 ENSMUSP00000033547.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033547.13Link to Ensembl Protein Viewer:ENSMUSP00000033547.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033547Re-query CCDS DB by Protein ID:ENSMUSP00000033547
Original member Current member EBI ENSMUST00000114057.7 ENSMUSP00000109691.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114057.7Link to Ensembl Protein Viewer:ENSMUSP00000109691.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114057Re-query CCDS DB by Protein ID:ENSMUSP00000109691
Original member Current member EBI ENSMUST00000114059.9 ENSMUSP00000109693.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114059.9Link to Ensembl Protein Viewer:ENSMUSP00000109693.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114059Re-query CCDS DB by Protein ID:ENSMUSP00000109693
Original member Current member NCBI NM_001166453.1 NP_001159925.1 Accepted alive Link to Nucleotide Sequence:NM_001166453.1Link to Protein Sequence:NP_001159925.1Re-query CCDS DB by Nucleotide ID:NM_001166453Re-query CCDS DB by Protein ID:NP_001159925Link to BLAST:NP_001159925.1
Original member Current member NCBI NM_001166454.2 NP_001159926.1 Accepted alive Link to Nucleotide Sequence:NM_001166454.2Link to Protein Sequence:NP_001159926.1Re-query CCDS DB by Nucleotide ID:NM_001166454Re-query CCDS DB by Protein ID:NP_001159926Link to BLAST:NP_001159926.1
Original member Current member NCBI NM_145629.2 NP_663604.1 Accepted alive Link to Nucleotide Sequence:NM_145629.2Link to Protein Sequence:NP_663604.1Re-query CCDS DB by Nucleotide ID:NM_145629Re-query CCDS DB by Protein ID:NP_663604Link to BLAST:NP_663604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159925.1 630 Q99K51 630 100% 0 0
NP_001159926.1 630 Q99K51 630 100% 0 0
NP_663604.1 630 Q99K51 630 100% 0 0

Chromosomal Locations for CCDS 30243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 75786767 75786899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75790962 75791086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75791285 75791408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75793589 75793722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75794177 75794291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75795307 75795385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75796334 75796529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75799395 75799490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75800502 75800644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75801576 75801741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75802525 75802606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75805140 75805272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75805751 75805880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75816084 75816247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75826873 75826945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGATGAGATGGCGACCACCCAGATTTCCAAAGATGAGCTTGATGAACTCAAAGAAGCCTTTGCAAAAG
TTGATCTCAACAGCAATGGATTCATTTGCGACTATGAGCTTCATGAGCTTTTCAAGGAAGCTAATATGCC
ACTGCCCGGATATAAAGTGAGAGAAATTATTCAGAAACTCATGGTGGATGGTGACAGAAATAAAGATGGG
AAGATCAGCTTTAATGAGTTTGTTTATATTTTCCAAGAGGTAAAGAGCAGTGATATCGCTAAAACCTTCC
GAAAGGCCATCAACAGGAAAGAAGGGATTTGTGCTCTGGGAGGGACATCAGAGTTGTCCAGTGAAGGGAC
CCAGCATTCCTATTCAGAGGAAGAAAAATATGCTTTTGTTAACTGGATAAACAAAGCTTTGGAAAATGAT
CCCGATTGTAGACATGTCATACCCATGAACCCAAATACTGATGACCTGTTCAAAGCAGTTGGTGATGGGA
TCGTGCTCTGCAAAATGATCAACCTTTCAGTTCCTGATACAATTGACGAGAGAGCAATCAATAAGAAGAA
GCTTACACCCTTCATCATTCAGGAAAACTTGAACTTGGCCCTGAACTCTGCTTCTGCCATTGGGTGTCAC
GTTGTGAACATTGGTGCCGAAGATCTGCGGGCCGGGAAACCTCACCTGGTTTTGGGACTGCTTTGGCAGA
TTATTAAGATTGGCCTGTTTGCTGACATTGAATTAAGCAGGAATGAAGCACTGGCAGCTTTGCTTCGAGA
TGGTGAGACACTGGAGGAGCTTATGAAATTGTCTCCAGAAGAGCTTCTGCTGAGATGGGCCAACTTCCAT
CTGGAAAACTCAGGCTGGCAAAAGATCAACAACTTCAGCGCTGACATCAAGGATTCCAAAGCCTATTTCC
ATCTGCTCAATCAAATCGCACCGAAGGGACAGAAAGAAGGGGAGCCACGGATAGATATTAACATGTCAGG
TTTCAATGAAACTGATGATTTAAAGAGAGCCGAAAGTATGCTTCAACAAGCAGATAAATTAGGTTGCAGA
CAGTTCGTTACTCCAGCTGATGTTGTCAGCGGAAACCCCAAACTGAACTTGGCCTTTGTAGCTAACCTCT
TCAATAAATATCCAGCACTAACTAAACCTGAAAACCAGGATATTGACTGGACTCTTCTAGAAGGGGAAAC
TCGGGAAGAAAGAACCTTCCGCAACTGGATGAACTCTCTTGGTGTTAATCCCCACGTCAACCATCTCTAT
GCTGACCTGCAGGATGCTCTGGTGATCCTACAGCTGTATGAGAGGATTAAAGTTCCTGTGGACTGGAGTA
AAGTTAACAAGCCTCCATACCCAAAGCTGGGGGCCAACATGAAGAAGTTAGAAAACTGCAACTATGCAGT
TGAATTAGGGAAGAATCCAGCTAAATTCTCCTTGGTTGGCATTGGAGGACAAGACCTGAACGATGGCAAC
CCTACCTTGACCTTGGCTGTAGTCTGGCAGCTGATGAGAAGATATACCCTTAATGTTCTGGAAGATCTTG
GAGAGGGTCAGAAAGCAAATGATGACATCATTGTAAACTGGGTCAACAGAACATTGAGTGAAGCTGGAAA
GTCAACTTCCATTCAGAGTTTTAAGGACAAGACCATCAGCTCCAGTTTGGCGGTTGTGGATTTAATTGAC
GCCATCCAACCAGGCTGCATTAACTATGACCTTGTGAAGAGTGGGAATCTAACAGAAGATGACAAGCACA
ATAACGCCAAGTACGCAGTATCGATGGCTAGAAGAATCGGAGCCAGAGTATATGCCCTCCCTGAAGACCT
TGTGGAAGTAAAACCGAAGATGGTCATGACTGTGTTTGCCTGTTTGATGGGCAGAGGGATGAAGAGAGTG
TAA

Translation (630 aa):
MDEMATTQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMVDGDRNKDG
KISFNEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYAFVNWINKALEND
PDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCH
VVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFH
LENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCR
QFVTPADVVSGNPKLNLAFVANLFNKYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLY
ADLQDALVILQLYERIKVPVDWSKVNKPPYPKLGANMKKLENCNYAVELGKNPAKFSLVGIGGQDLNDGN
PTLTLAVVWQLMRRYTLNVLEDLGEGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLID
AIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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