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Report for CCDS29899.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29899.2 Public Mus musculus 19 Xpnpep1 23 108 98 CCDS HistoryNCBI Gene:170750Re-query CCDS DB by CCDS ID:29899.2Re-query CCDS DB by GeneID:170750See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 29899.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29899.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183108.7 ENSMUSP00000138250.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183108.7Link to Ensembl Protein Viewer:ENSMUSP00000138250.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183108Re-query CCDS DB by Protein ID:ENSMUSP00000138250
Original member NCBI NM_133216.3 NP_573479.3 Updated not alive Link to Nucleotide Sequence:NM_133216.3Link to Protein Sequence:NP_573479.3Re-query CCDS DB by Nucleotide ID:NM_133216Re-query CCDS DB by Protein ID:NP_573479
Current member NCBI NM_133216.4 NP_573479.3 Accepted alive Link to Nucleotide Sequence:NM_133216.4Link to Protein Sequence:NP_573479.3Re-query CCDS DB by Nucleotide ID:NM_133216Re-query CCDS DB by Protein ID:NP_573479Link to BLAST:NP_573479.3

Chromosomal Locations for CCDS 29899.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52991591 52991719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52995421 52995519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52996249 52996325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52996900 52997073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52997874 52997943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52999152 52999212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53000389 53000460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53002474 53002551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53002679 53002737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53003764 53003814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53004764 53004853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53006155 53006365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53007871 53007952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53010068 53010163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53011766 53011909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53012189 53012281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53013399 53013503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53014611 53014674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53025259 53025383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53032009 53032097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53038514 53038545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGCAGCCTCCAGAAAGCCGCCGCGAGTAAGGGCGAATCGCCAGGACTTTCAGCTGAGAAATTTAAGAA
TAATTGAACCTAACGAGGTGACACCCTCAGGAGACAAGAGTGTGGAAACAGACCACAGGATGGCTCCGAA
GGTGACTTCAGAACTGCTTCGGCAGCTGCGACAAGCTATGAGGAACTCCGAATACGTGGCAGAACCCATC
CAGGCCTATATCATCCCGTCAGGAGATGCCCACCAGAGCGAGTACATTGCACCCTGTGACTGTCGGAGGG
CGTTTGTCTCTGGATTCGATGGCTCTGCAGGCACAGCCATCATCACGGAGGAGCATGCGGCCATGTGGAC
TGACGGGCGCTACTTCCTCCAGGCTGCCAAACAGATGGACAACAACTGGACTCTCATGAAGATGGGTCTG
AAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACC
CCCTCATCATTCCCACAGATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGT
GCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTC
ACACTGGGCCTGGATTATACAGGCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAG
AGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCATGGCTGTTCAATCTCCGCGGGTC
AGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCATGCTCTTCATT
GACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAAT
ACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCC
GAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAGGATCACCGC
TGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGA
GGCGGGCTCACATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAGGTTCCCAA
AGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAGGCAGCAGGCTGACTTTGTG
GATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACGCGCCAGTCCCTG
AGACGAACAGGACCCTGTCCCTGGACGAGGTTTACCTCATTGACTCCGGTGCTCAGTACAAGGATGGAAC
CACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAGGAATGCTTCACATACGTA
CTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAGGCCACCTTCTGGACTCCT
TTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTT
TTTGAATGTTCACGAGGGGCCCTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGC
ATGATCGTCACTGATGAGCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTC
TGGTGGTCCCAGCAAAAACCAAGTATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTT
GGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAGTGTGACTGGCTCAACAGC
TACCACCAGACCTGCAGGGACGTGGTTGGGAAGGAGCTGCAGAGCCAGGGCCGCCAGGAAGCTCTCGAGT
GGCTCATCAGAGAGACAGAGCCTGTCTCCAGGCAGCATTGA

Translation (666 aa):
MAASRKPPRVRANRQDFQLRNLRIIEPNEVTPSGDKSVETDHRMAPKVTSELLRQLRQAMRNSEYVAEPI
QAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDNNWTLMKMGL
KDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLVPVKENLVDKIWTDRPERPCKPLL
TLGLDYTGISWKEKVADLRLKMAERSIAWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIVGLETIMLFI
DGDRVDAPGVKQHLLLDLGLEAEYRIQVLPYKSILSELKALCADLSPREKVWVSDKASYAVSEAIPKDHR
CCMPYTPICIAKAVKNSAESDGMRRAHIKDAVALCELFNWLEQEVPKGGVTEISAADKAEEFRRQQADFV
DLSFPTISSTGPNGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFGTPTAYEKECFTYV
LKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAG
MIVTDEPGYYEDGAFGIRIENVVLVVPAKTKYNFNNRGSLTFEPLTLVPIQTKMIDVNALTDKECDWLNS
YHQTCRDVVGKELQSQGRQEALEWLIRETEPVSRQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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