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Report for CCDS297.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
297.2 Public Homo sapiens 1 TMEM222 24 110 108 CCDS HistoryNCBI Gene:84065Re-query CCDS DB by CCDS ID:297.2Re-query CCDS DB by GeneID:84065See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 297.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374076.9 ENSP00000363189.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374076.9Link to Ensembl Protein Viewer:ENSP00000363189.4Re-query CCDS DB by Nucleotide ID:ENST00000374076Re-query CCDS DB by Protein ID:ENSP00000363189
Original member Current member EBI ENST00000611517.4 ENSP00000483276.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611517.4Link to Ensembl Protein Viewer:ENSP00000483276.1Re-query CCDS DB by Nucleotide ID:ENST00000611517Re-query CCDS DB by Protein ID:ENSP00000483276
Original member Current member NCBI NM_032125.3 NP_115501.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032125.3Link to Protein Sequence:NP_115501.2Re-query CCDS DB by Nucleotide ID:NM_032125Re-query CCDS DB by Protein ID:NP_115501Link to BLAST:NP_115501.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115501.2 208 Q9H0R3-1 208 100% 0 0

Chromosomal Locations for CCDS 297.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27322198 27322391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27330720 27330804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27332070 27332101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27333958 27334054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27334151 27334281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27335379 27335466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGCGGAAGCGGAAGGGAGTTCTCTGCTCTTGTTGCCGCCGCCGCCACCCCCGCCCAGGATGGCGGAAG
TGGAGGCGCCGACGGCGGCCGAGACGGACATGAAGCAATATCAAGGCTCCGGCGGCGTCGCCATGGATGT
GGAACGGAGTCGCTTCCCCTACTGCGTGGTGTGGACGCCCATCCCGGTGCTCACGTGGTTTTTCCCCATC
ATCGGCCACATGGGCATCTGCACATCCACAGGAGTCATTCGGGACTTCGCGGGCCCCTACTTTGTCTCAG
AGGACAACATGGCCTTTGGAAAGCCTGCCAAGTACTGGAAGTTGGACCCTGCTCAGGTCTATGCTAGCGG
GCCCAACGCATGGGACACGGCTGTGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAATCTCTGC
TGTGACAACTGCCACTCGCACGTGGCATTGGCCCTGAATCTGATGCGCTACAACAACAGCACCAACTGGA
ATATGGTGACGCTCTGCTTCTTCTGCCTGCTCTACGGGAAGTACGTCAGCGTTGGGGCCTTCGTGAAGAC
CTGGCTGCCCTTCATCCTTCTCCTGGGCATCATCCTCACCGTCAGCCTGGTCTTTAACCTCCGGTGA

Translation (208 aa):
MAEAEGSSLLLLPPPPPPPRMAEVEAPTAAETDMKQYQGSGGVAMDVERSRFPYCVVWTPIPVLTWFFPI
IGHMGICTSTGVIRDFAGPYFVSEDNMAFGKPAKYWKLDPAQVYASGPNAWDTAVHDASEEYKHRMHNLC
CDNCHSHVALALNLMRYNNSTNWNMVTLCFFCLLYGKYVSVGAFVKTWLPFILLLGIILTVSLVFNLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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