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Report for CCDS29487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29487.1 Public Mus musculus 19 Syvn1 23 108 98 CCDS HistoryNCBI Gene:74126Re-query CCDS DB by CCDS ID:29487.1Re-query CCDS DB by GeneID:74126See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138532.7 ENSMUSP00000114843.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138532.7Link to Ensembl Protein Viewer:ENSMUSP00000114843.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138532Re-query CCDS DB by Protein ID:ENSMUSP00000114843
Original member Current member EBI ENSMUST00000134667.7 ENSMUSP00000114960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134667.7Link to Ensembl Protein Viewer:ENSMUSP00000114960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134667Re-query CCDS DB by Protein ID:ENSMUSP00000114960
Original member Current member NCBI NM_001164709.1 NP_001158181.1 Accepted alive Link to Nucleotide Sequence:NM_001164709.1Link to Protein Sequence:NP_001158181.1Re-query CCDS DB by Nucleotide ID:NM_001164709Re-query CCDS DB by Protein ID:NP_001158181Link to BLAST:NP_001158181.1
Original member Current member NCBI NM_028769.5 NP_083045.4 Accepted alive Link to Nucleotide Sequence:NM_028769.5Link to Protein Sequence:NP_083045.4Re-query CCDS DB by Nucleotide ID:NM_028769Re-query CCDS DB by Protein ID:NP_083045Link to BLAST:NP_083045.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158181.1 612 Q9DBY1-1 612 99.8366% 0 1
NP_083045.4 612 Q9DBY1-1 612 99.8366% 0 1

Chromosomal Locations for CCDS 29487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6047934 6048065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6048275 6048367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6048455 6048607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6048695 6048743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6049150 6049253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6049771 6049897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6049992 6050091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6050170 6050235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6050325 6050441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6050522 6050685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6050941 6051069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6051155 6051310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6051393 6051579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6052328 6052479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6052548 6052657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGTTCCGCACCGCAGTGATGATGGCGGCCAGCCTGGCGCTAACCGGGGCAGTGGTGGCTCATGCCTACT
ACCTCAAACACCAGTTCTACCCCACTGTAGTGTATTTGACCAAGTCCAGCCCCAGCATGGCAGTCCTGTA
CATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGG
GCAGCAGAGATGGAGCACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCG
TTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCA
TTGGTTGGCTGAAGACCGTGTGGACTTTATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGC
ATCGTCTCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCC
TGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAGTACGCCATTCTGATGACCATGGTGCTTAC
CATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTA
TACATGCTCTACACGGAGCTGTTTACAGGCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCA
TGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAGGCAGTTCAAGAA
AGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTGTACCCAGATGCCACC
CCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGA
GATTGCCTTGCAACCACATCTTTCACACGAGCTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCC
GACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGAC
CAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATTTCCCCCAGGGCCTCC
TGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCC
CCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGCCGTTTCTCGGCCTAGTGGAGCAGCC
ACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTC
CTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTGCCTTCCCCCC
AATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAG
CGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTC
AAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGGGCCCCCCAGGCCAGCTACTTCAGTGAACCCCAC
TGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACC
CCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGCTCCTGAGTCAGTGGGCATTG
TAGAGGAGCTTCCCGAGGATGGAGAGCCTGATGCTGCAGAACTCCGCCGGCGTCGCCTGCAGAAGCTGGA
GTCCCCTGTTGCCCACTGA

Translation (612 aa):
MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLR
AAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHCR
IVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAILMTMVLTIFIKYVLHSVDLQSENPWDNKAV
YMLYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDAT
PEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPAD
QGPPPAPHPQPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAAAPPPTSTAVSRPSGAA
TTTAAGTSTSAPAPGSVPGPEAGPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHE
RQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPRPATSVNPTEETASTVVSAAPSTSAPSSEAPT
PSPGASPPIPEAEKPPAPESVGIVEELPEDGEPDAAELRRRRLQKLESPVAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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