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Report for CCDS28998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28998.1 Public Mus musculus 17 Zfp36l2 23 108 98 CCDS HistoryNCBI Gene:12193Re-query CCDS DB by CCDS ID:28998.1Re-query CCDS DB by GeneID:12193See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060366.6 ENSMUSP00000050820.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060366.6Link to Ensembl Protein Viewer:ENSMUSP00000050820.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060366Re-query CCDS DB by Protein ID:ENSMUSP00000050820
Original member Current member NCBI NM_001001806.2 NP_001001806.1 Accepted alive Link to Nucleotide Sequence:NM_001001806.2Link to Protein Sequence:NP_001001806.1Re-query CCDS DB by Nucleotide ID:NM_001001806Re-query CCDS DB by Protein ID:NP_001001806Link to BLAST:NP_001001806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001806.1 484 P23949 484 100% 0 0

Chromosomal Locations for CCDS 28998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 84185753 84187156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84187644 84187694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGTCGACCACACTTCTGTCACCCTTCTACGATATCGACTTCTTGTGCAAGACGGAGAAATCCCTGGCAA
ACCTCAATCTGAACAACATGCTGGACAAGAAGGCGGTAGGGACGCCCGTGGCTGCTGCCCCCAGCTCGAG
CTTCACTCCGGGCTTCCTGCGACGCCACTCCGCCAGCAACCTCCACGCGCTTGCCCACCCTGTGCCCAGT
CCGGGCAGCTGCTCGCCGAAGTTCCCGGGCGCCCCTAACGGCGGCGGCAGCAGCTGTGGCCCCGCAGGCG
GAGGCGGTCTGGCCTCCTACGGCCAGCTCAAGGAGCCTTCGGGGGGCAGCGGCACGGCGCTGGTCACCAA
GGAGAGCAAATTTCGGGACCGCTCGTTCAGCGAGAACGGGGAGCGCAGCCAGCACCTCCTGCACCTGCAG
CAGCAGCAGAAGGGGGGCAGCGGCTCCCAGATCAACTCCACGCGCTACAAGACGGAGCTGTGCCGGCCCT
TCGAGGAGAGCGGCACGTGCAAGTACGGCGAGAAGTGCCAGTTCGCGCACGGCTTCCACGAGCTGCGCAG
CCTCACCCGGCACCCCAAGTACAAGACAGAGCTGTGCCGCACCTTCCACACCATCGGCTTCTGCCCCTAC
GGCCCGCGCTGCCACTTCATCCACAACGCGGACGAGCGGCGGCCCGCGCCGTCGGGGGGCGGCGGCGCCT
CCGGGGACCTGCGAGCGTTTGGCGCACGCGACGCGCTACACCTAGGCTTCGCCCGCGAGCCGCGGCCCAA
GCTGCATCACAGCCTCAGTTTCTCCGGCTTCCCGTCGGGCCACCACCAGCCGCCGGGGGGCCTGGAGTCG
CCGCTGCTGCTCGACAGCCCCACATCGCGCACGCCGCCGCCGCCCTCCTCCTCGGCCTCGTCCTGTTCCT
CCTCGGCTTCTTCCTGCTCTTCCGCCTCGGCGGCCTCCACGCCCTCGGGCGCCCCGACGTGCTGCGCCAC
GGCGGCGGCGGCCGCGCTGCTCTACGGCCCCGGGGGCGCGGAGGACCTGCTGAGCCCCGGAGCGCCGTGC
GCCTCCTGCTCGTCCTCCGGCGCTAACAACGCCTTCGCTTTCGGCCCGGAGCTGAGCAGCCTCATCACGC
CGCTCGCCATCCAGACCCACAACTTCGCCGCCGCGGCCGCCGCCGCCTACTACCGCAACCAGCAGCAGGG
CCTGACCGGTCCCGCGCCACCCCCGGCACAGCCCCCCGCGGCCCCCGCGCCGCCCTCCCCGCCCTTCGGC
TTCCAGCTGCCGCGCCGTCTGTCCGAGTCGCCCGTGTTCGACGCGCCCCCCAGCCCCCCGGACTCGCTCT
CGGACCGCGACAGCTACCTGAGCGGCTCGCTGAGCTCCGGCAGCCTCAGCGGCTCCGAGTCCCCCAGCCT
GGACCCTGGCCGTCGCCTACCCATCTTCAGCCGCCTCTCCATCTCCGACGACTGA

Translation (484 aa):
MSTTLLSPFYDIDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSSFTPGFLRRHSASNLHALAHPVPS
PGSCSPKFPGAPNGGGSSCGPAGGGGLASYGQLKEPSGGSGTALVTKESKFRDRSFSENGERSQHLLHLQ
QQQKGGSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY
GPRCHFIHNADERRPAPSGGGGASGDLRAFGARDALHLGFAREPRPKLHHSLSFSGFPSGHHQPPGGLES
PLLLDSPTSRTPPPPSSSASSCSSSASSCSSASAASTPSGAPTCCATAAAAALLYGPGGAEDLLSPGAPC
ASCSSSGANNAFAFGPELSSLITPLAIQTHNFAAAAAAAYYRNQQQGLTGPAPPPAQPPAAPAPPSPPFG
FQLPRRLSESPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLPIFSRLSISDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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