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Report for CCDS28635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28635.1 Public Mus musculus 17 Rgl2 23 108 98 CCDS HistoryNCBI Gene:19732Re-query CCDS DB by CCDS ID:28635.1Re-query CCDS DB by GeneID:19732See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047503.15 ENSMUSP00000041082.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047503.15Link to Ensembl Protein Viewer:ENSMUSP00000041082.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000047503Re-query CCDS DB by Protein ID:ENSMUSP00000041082
Original member NCBI NM_009059.2 NP_033085.2 Updated not alive Link to Nucleotide Sequence:NM_009059.2Link to Protein Sequence:NP_033085.2Re-query CCDS DB by Nucleotide ID:NM_009059Re-query CCDS DB by Protein ID:NP_033085
Current member NCBI NM_009059.3 NP_033085.2 Accepted alive Link to Nucleotide Sequence:NM_009059.3Link to Protein Sequence:NP_033085.2Re-query CCDS DB by Nucleotide ID:NM_009059Re-query CCDS DB by Protein ID:NP_033085Link to BLAST:NP_033085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033085.2 778 Q61193 778 100% 0 0

Chromosomal Locations for CCDS 28635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33930286 33930441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33931726 33931809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33932040 33932218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33932321 33932371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33932454 33932751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33933009 33933260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33933351 33933454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33933541 33933625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33933712 33933780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33933897 33933971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33934975 33935007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33935134 33935255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33935360 33935455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33935545 33935656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33935740 33936033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33936863 33936977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33937065 33937276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGACCCCCCCCGGGGGAGTCGTGCTGAGCAGCTTCC
GGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGA
TGAGGAAGAAGAAGAGGCTTCTGTGTCAGTCTGGGACGAGGAGGAGGATGGTGCGACCTTTACTGTCACA
AGCCGCCAGTACAGGCCTCTTGACCCCTTGGCTCCCTTGCCTCCACCTCGCTCCTCCCGACGGCTCCGCG
CTGGCACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACAGCAGGGGCTGACATGATGTTCAC
TCCGGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAGG
CTGGAAGCCCTTGAATCTCATCCTCCCGGTGAGCTAGAGAGGACCACAGGGGTAGCCATCTCTGTACTTT
CAACTTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAG
CTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAAC
CTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGGCGATTCCCCTG
CTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCGGA
ACTGTTTCTTAATCTGATCCCCTCTCAGTGTTTGGGAGGCCTCTGGGGTCACAGAGACCGGCCAGGACAT
TCTCACCTCTGCCCGTCTGTCCGAGCTACCGTCACACAGTTCAACAAGGTGGCGGGGGCGGTAGTTAGCT
CTGTCTTGGGGGCCACCTCAATTGGAGAGGGGCCAAGAGAGGTGACTGTGAGACCACTGCGGCCCCCACA
GAGGGCCCGGCTCCTAGAGAAGTGGATCCGTGTGGCCGAGGAGTGCCGCCTGCTTCGGAACTTCTCCTCA
GTGTATGCTGTTGTGTCCGCTCTGCAGTCCAGCCCTATCCACAGGCTTCGGGCAGCCTGGGGGGAGACAA
CCAGGGACAGCCTCCGAGTCTTTTCCAGCCTGTGCCAGATTTTCTCAGAGGAGGATAATTATTCCCAGAG
CAGAGAGCTCCTCATGCAGGAAGTGAAGCCGCAGCCCCCTGTGGAGCCACACTCCAAGAAGGCCCCAAGG
TCTGGCTTCAGGGGTGGGGGTGTGGTTCCCTACCTGGGAACCTTCCTGAAGGACCTCGTGATGCTGGATG
CGGCCTCCAAGGATGAGCTGGAGAATGGCTACATCAATTTTGACAAGCGGAGGAAGGAGTTTGCTATCCT
TTCGGAGCTGTTGCGCCTCCAGAAAGAATGTCGTGGCTACGACCTCCGACCTAACTCTGATATCCAGCAA
TGGCTCCAGGGCCTCCAGCCTTTAACTGAAGCTCAGAGTCACCGTGTATCCTGTGAAGTGGAGCCACCAG
GGACCAGTGACTCCCCCGCTGCAAGGACACCTCGGCCAACACTAGTGATCACACAGTGGACGGAAGTTCT
GGGCTCTGTTGGAGGCCCCACTCCGCTTGTGTCCTGGGATCGGCCCAGTGTCGGGGGAGATGAGGTGCCT
GGAACCCCAGCACCTCTGCTGACTCGCCTCGCCCAGCACATGAAGTGGCCATCAGTCTCATCTCTGGACT
CTGCCCTGGAAAGCAGCCCCTCCTTGCACAGCCCTGCTGACCCTGGCCACCTCTCTCCTCCAGCCTCCTC
CCCTAGGCCTTCCCGGGGTCACCGTCGCTCAGCCTCCTGTGGGTCTCCGTTGAGTGGAAACACAGGAGAA
GGGACCTCTAGGAGTGCTGGATGTGGGGGCGGGGTATCTGGGCCAGGGTCCTCTGATTGCCGAATCATCC
GAGTCCAGATGGAGCTGGGGGAGGATGGCAGCGTCTACAAGAGCATCCTGGTGACAAGCCAGGACAAAGC
TCCAAGTGTTATTAGTCGTGTCCTTAAGAAAAACAATCGTGATTCTGCTGTGGCTTCAGAGTTCGAGCTG
GTGCAGCTGCTACCTGGGGATCGAGAGCTGACCATCCCACACTCAGCTAACGTCTTCTATGCCATGGATG
GTGCATCTCATGACTTCCTCCTGCGGCAGCGCAGAAGACCCTCTGCTGCCACCCCGGGTTCCCACAGCGG
CCCCTCTGCCTCAGGAACTCCTCCGAGCGAGGGGGGAGGGGGCTCCTTTCCCAGGATCAAGGCCACGGGG
AGGAAGATTGCACGGGCACTGTTCTGA

Translation (778 aa):
MLPRPLRLLLDTTPPGGVVLSSFRSRDPEEGGDPGGRAVGGGQEEEDEEEEEASVSVWDEEEDGATFTVT
SRQYRPLDPLAPLPPPRSSRRLRAGTLEALVRHLLDARTAGADMMFTPALLATHRAFTSTPALFGLVADR
LEALESHPPGELERTTGVAISVLSTWLASHPEDFGSEVKGQLDRLESFLLRTGYAAREGVVGGSADLIRN
LRARVDPRAPDLPKPLALPGDSPADPTDVLVFLADHLAEQLTLLDAELFLNLIPSQCLGGLWGHRDRPGH
SHLCPSVRATVTQFNKVAGAVVSSVLGATSIGEGPREVTVRPLRPPQRARLLEKWIRVAEECRLLRNFSS
VYAVVSALQSSPIHRLRAAWGETTRDSLRVFSSLCQIFSEEDNYSQSRELLMQEVKPQPPVEPHSKKAPR
SGFRGGGVVPYLGTFLKDLVMLDAASKDELENGYINFDKRRKEFAILSELLRLQKECRGYDLRPNSDIQQ
WLQGLQPLTEAQSHRVSCEVEPPGTSDSPAARTPRPTLVITQWTEVLGSVGGPTPLVSWDRPSVGGDEVP
GTPAPLLTRLAQHMKWPSVSSLDSALESSPSLHSPADPGHLSPPASSPRPSRGHRRSASCGSPLSGNTGE
GTSRSAGCGGGVSGPGSSDCRIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVASEFEL
VQLLPGDRELTIPHSANVFYAMDGASHDFLLRQRRRPSAATPGSHSGPSASGTPPSEGGGGSFPRIKATG
RKIARALF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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