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Report for CCDS28608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28608.1 Public Mus musculus 17 Pknox1 23 108 98 CCDS HistoryNCBI Gene:18771Re-query CCDS DB by CCDS ID:28608.1Re-query CCDS DB by GeneID:18771See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097352.10 ENSMUSP00000094966.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097352.10Link to Ensembl Protein Viewer:ENSMUSP00000094966.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097352Re-query CCDS DB by Protein ID:ENSMUSP00000094966
Original member Current member EBI ENSMUST00000175806.8 ENSMUSP00000134852.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175806.8Link to Ensembl Protein Viewer:ENSMUSP00000134852.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175806Re-query CCDS DB by Protein ID:ENSMUSP00000134852
Original member Current member EBI ENSMUST00000176701.3 ENSMUSP00000135804.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176701.3Link to Ensembl Protein Viewer:ENSMUSP00000135804.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176701Re-query CCDS DB by Protein ID:ENSMUSP00000135804
Original member NCBI NM_016670.3 NP_057879.2 Updated not alive Link to Nucleotide Sequence:NM_016670.3Link to Protein Sequence:NP_057879.2Re-query CCDS DB by Nucleotide ID:NM_016670Re-query CCDS DB by Protein ID:NP_057879
Current member NCBI NM_016670.4 NP_057879.2 Accepted alive Link to Nucleotide Sequence:NM_016670.4Link to Protein Sequence:NP_057879.2Re-query CCDS DB by Nucleotide ID:NM_016670Re-query CCDS DB by Protein ID:NP_057879Link to BLAST:NP_057879.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057879.2 436 O70477 436 100% 0 0

Chromosomal Locations for CCDS 28608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31583753 31583803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31588460 31588587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31590603 31590774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31592105 31592275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31595225 31595324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31596796 31596893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31599515 31599643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31602786 31602862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31603187 31603359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31604753 31604964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGATGGCGACACAGACGCTAAGTATAGACAGCTATCAAGATGGACAGCAAATGCAGGTGGTCACGGAGT
TAAAAACAGAGCAAGATCCCAACTGCTCTGACCCAGATGCAGAAGGAGTGAGTCCTCCTCCCATCGAGTC
TCAGACCCCAATGGATGCCGACAAGCAGGCCATTTATAGGCATCCACTATTTCCGTTGCTAGCTTTGTTG
TTTGAGAAGTGTGAGCAGTCCACACAGGGCTCAGAAGGCACGACGTCTGCCAGCTTCGATGTGGACATTG
AGAACTTTGTCAGGAAGCAAGAAAAGGATGGGAAACCCTTCTTCTGTGAAGATCCGGAAACTGACAACCT
AATGGTGAAAGCAATCCAGGTCCTGCGCATTCATCTTCTTGAACTGGAGAAGGTTAATGAGCTCTGTAAA
GATTTCTGTAGTCGGTACATTGCTTGTCTGAAGACAAAAATGAACAGCGAGACCTTGTTGAGTGGGGAGC
CTGGAAGTCCGTACTCCCCTGTGCAATCCCAGCAGATTCAGAGTGCCATCACAGGCACGCTCAGCCCCCA
GGGAATCGTGGTGCCAGCATCAGCCCTACAACAGGGAAATGTAACCATGGCAACAGTGGCAGGTGGCACA
GTGTACCAGCCTGTCACCGTCGTCACTCCGCAAGGCCAAGTGGTCACGCAGGCATTATCTCCTGGGACAA
TTAGGATCCAGAACTCACAGCTGCAGTTGCAGTTGAACCAAGACCTCAGCATCTTGCATCAAGAGGATGG
CTCCTCCAAGAACAAGAGGGGTGTCCTGCCGAAGCACGCCACCAACGTGATGCGGTCCTGGCTCTTTCAG
CACATAGGGCATCCCTACCCAACAGAGGATGAGAAAAAGCAGATTGCTGCTCAGACGAATCTGACCCTGC
TTCAAGTCAACAACTGGTTCATCAACGCGAGAAGACGAATTCTCCAGCCAATGTTGGATTCCAGCTGCTC
AGAGACTCCAAAAACGAAGAAAAAACCTGCTCAGAACAGGCCAGTTCAGAGGTTTTGGCCAGATTCTCTT
GCATCAGGAGTGGCACAAGCAACACCCAGCGAGCTTGCCATGTCAGAAGGTGCCGTTGTGACCATCACCA
CACCTGTAAACATGAATGTGGACAGCCTTCAGTCCCTGTCCTCAGACGGGGCCACCCTGGCCGTACAGCA
GGTCATGATGGCAGGGCAGAGTGAGGACGAGTCGGTGGATAGCACAGAGGATGAGGGCGGCGCCCTGGCG
CCCACACACATCAGCGGGCTGGTGCTGGAGAACAGCGACTCCCTTCAGTAG

Translation (436 aa):
MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSDPDAEGVSPPPIESQTPMDADKQAIYRHPLFPLLALL
FEKCEQSTQGSEGTTSASFDVDIENFVRKQEKDGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCK
DFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAITGTLSPQGIVVPASALQQGNVTMATVAGGT
VYQPVTVVTPQGQVVTQALSPGTIRIQNSQLQLQLNQDLSILHQEDGSSKNKRGVLPKHATNVMRSWLFQ
HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKPAQNRPVQRFWPDSL
ASGVAQATPSELAMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEDEGGALA
PTHISGLVLENSDSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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