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Report for CCDS28319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28319.1 Public Mus musculus 16 Eva1c 23 108 98 CCDS HistoryNCBI Gene:70967Re-query CCDS DB by CCDS ID:28319.1Re-query CCDS DB by GeneID:70967See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099543.9 ENSMUSP00000097141.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099543.9Link to Ensembl Protein Viewer:ENSMUSP00000097141.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099543Re-query CCDS DB by Protein ID:ENSMUSP00000097141
Original member Current member NCBI NM_027627.3 NP_081903.1 Accepted alive Link to Nucleotide Sequence:NM_027627.3Link to Protein Sequence:NP_081903.1Re-query CCDS DB by Nucleotide ID:NM_027627Re-query CCDS DB by Protein ID:NP_081903Link to BLAST:NP_081903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081903.1 392 P58659-2 392 100% 0 0

Chromosomal Locations for CCDS 28319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90831273 90831432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90866255 90866451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90869566 90869689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90876039 90876191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90894578 90894655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90897364 90897453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90904104 90904480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGCTCCTGCCAGGACACCCGCGTCCACCACCCGCGCCCCAATCGGCGCAGAATCAGGGCCTCCGCAGGC
AGGTAGAGCCTCCGGGGCAGCTTCTGCGCCTGTTCTACTGCACGGTCCTAGTGTGCTCCAAAGAGACCTC
CGCGCTCACCGATTTCTCTGGTTACTTAACCAAACTCCTGCAAAACCACACTGCCTATGCCTGTGACGGG
GACTATCTGAATCTACAGTGCCCTCGGCATTCAACAATAAGTGTCCAGTCGGCATTTTATGGGCAAGATT
ACCAAATGTGTAGTTCCCAGGAGCCCATCTCCCAGAGGGAAGACAACCTGACCTGTGTGGCATCCACCAC
TTTGCAGAAGGTGCTGGACGAGTGCCAGAACCAGCGGGCCTGCCACCTCCTGGTCAATAGCCGAGTCTTC
GGACCTGACCTTTGTCCAGGAAGCAGTAAATACCTCCTGGTCTCCTTTAAATGCCAACCTAATGAGTTGA
AAAACAAGACAGTGTGTGAAAACCAGGAGTTGAAGCTACACTGCCATGAGTCCAAGTTCCTCAACATCTA
CTCCGCCGCCTACGGCCGGAGGACCCAGCAAAGAGACATCTGCTCCTCCGGGGCGGAGCTGCTGCCCCCC
TTCGTTCCCAAGAACATACTCACGGCAGTGGATCCGGCTGTTGCTAATCTAAATCCTTCTCTGAAGAAAG
ATGATGAACACGGTATAACATTCAACCCAAGCGGGTCGAGGGTTGTGCGGAAAGATGGCGTTATCGTCAG
CAACTCTCTGGCCGCGTTCGCTTACATTCGAGCCCACCCAGAGAGAGCCGCTCTGCTGTTCATGTCCAGT
GTCTGCATCGGCCTGCTCCTCACACTGTGTGCCCTGGTCATCAGGGTGTCCTGTACGAAGGACTTCCGGG
AGCTGAGGCAGGGGAGGGAGCACCTGGTGCTAGGGAGCGACAAGGCGGAGGAGGACAGCGAGGAAGACTT
GGAAGAGGAGGACTCCTCGGATTCGCAGTTTCCCGAGGAGTTGTCCAGGTTTTGTAGGACTTCATATCCA
GCCTATAGCTCTATAGAAGCCGCCGAGCTGGCGGAAAGGATTGAACGCAGGGAGCAAGTCATTCAAGAGA
TATGGATGAACAGTGGCCTGGATTCCTCACTCCCCAGGAACGTCGGCCACTTCTACTGA

Translation (392 aa):
MLLPGHPRPPPAPQSAQNQGLRRQVEPPGQLLRLFYCTVLVCSKETSALTDFSGYLTKLLQNHTAYACDG
DYLNLQCPRHSTISVQSAFYGQDYQMCSSQEPISQREDNLTCVASTTLQKVLDECQNQRACHLLVNSRVF
GPDLCPGSSKYLLVSFKCQPNELKNKTVCENQELKLHCHESKFLNIYSAAYGRRTQQRDICSSGAELLPP
FVPKNILTAVDPAVANLNPSLKKDDEHGITFNPSGSRVVRKDGVIVSNSLAAFAYIRAHPERAALLFMSS
VCIGLLLTLCALVIRVSCTKDFRELRQGREHLVLGSDKAEEDSEEDLEEEDSSDSQFPEELSRFCRTSYP
AYSSIEAAELAERIERREQVIQEIWMNSGLDSSLPRNVGHFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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