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Report for CCDS283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
283.1 Public Homo sapiens 1 HMGN2 24 110 108 CCDS HistoryNCBI Gene:3151Re-query CCDS DB by CCDS ID:283.1Re-query CCDS DB by GeneID:3151See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 283.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361427.6 ENSP00000355228.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361427.6Link to Ensembl Protein Viewer:ENSP00000355228.5Re-query CCDS DB by Nucleotide ID:ENST00000361427Re-query CCDS DB by Protein ID:ENSP00000355228
Original member Current member EBI ENST00000619352.4 ENSP00000481160.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619352.4Link to Ensembl Protein Viewer:ENSP00000481160.1Re-query CCDS DB by Nucleotide ID:ENST00000619352Re-query CCDS DB by Protein ID:ENSP00000481160
Original member Current member NCBI NM_005517.4 NP_005508.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005517.4Link to Protein Sequence:NP_005508.1Re-query CCDS DB by Nucleotide ID:NM_005517Re-query CCDS DB by Protein ID:NP_005508Link to BLAST:NP_005508.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005508.1 90 P05204 90 100% 0 0

Chromosomal Locations for CCDS 283.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26472613 26472627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26473483 26473527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26473703 26473732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26474085 26474135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26474572 26474667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26475113 26475148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAGGGAGATAAAGCAAAGGTGAAGGACGAACCACAGAGAA
GATCCGCGAGGTTGTCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAA
GAAGGGAGAGAAGGTACCCAAAGGGAAAAAGGGAAAAGCTGATGCTGGCAAGGAGGGGAATAACCCTGCA
GAAAATGGAGATGCCAAAACAGACCAGGCACAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGA

Translation (90 aa):
MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKEGNNPA
ENGDAKTDQAQKAEGAGDAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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