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Report for CCDS28165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28165.1 Public Mus musculus 16 Cox17 23 108 98 CCDS HistoryNCBI Gene:12856Re-query CCDS DB by CCDS ID:28165.1Re-query CCDS DB by GeneID:12856See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050273.8 ENSMUSP00000054086.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050273.8Link to Ensembl Protein Viewer:ENSMUSP00000054086.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000050273Re-query CCDS DB by Protein ID:ENSMUSP00000054086
Original member Current member EBI ENSMUST00000119704.1 ENSMUSP00000112386.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119704.1Link to Ensembl Protein Viewer:ENSMUSP00000112386.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119704Re-query CCDS DB by Protein ID:ENSMUSP00000112386
Original member Current member EBI ENSMUST00000120495.1 ENSMUSP00000113430.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120495.1Link to Ensembl Protein Viewer:ENSMUSP00000113430.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120495Re-query CCDS DB by Protein ID:ENSMUSP00000113430
Original member Current member NCBI NM_001017429.2 NP_001017429.1 Accepted alive Link to Nucleotide Sequence:NM_001017429.2Link to Protein Sequence:NP_001017429.1Re-query CCDS DB by Nucleotide ID:NM_001017429Re-query CCDS DB by Protein ID:NP_001017429Link to BLAST:NP_001017429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017429.1 63 P56394 63 100% 0 0

Chromosomal Locations for CCDS 28165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38347101 38347207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38349241 38349325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (192 nt):
ATGCCGGGACTGGCGGCCGCTAGCCCTGCCCCGCCCGAGGCTCAGGAGAAGAAGCCACTGAAGCCCTGCT
GTGCCTGCCCGGAAACCAAGAAGGCGCGTGATGCGTGCATCATTGAGAAAGGAGAAGAACACTGTGGACA
TCTCATTGAAGCCCACAAGGAGTGCATGAGGGCACTGGGATTTAAGATATGA

Translation (63 aa):
MPGLAAASPAPPEAQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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