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Report for CCDS2809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2809.1 Public Homo sapiens 3 RBM6 24 110 108 CCDS HistoryNCBI Gene:10180Re-query CCDS DB by CCDS ID:2809.1Re-query CCDS DB by GeneID:10180See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266022.9 ENSP00000266022.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266022.9Link to Ensembl Protein Viewer:ENSP00000266022.4Re-query CCDS DB by Nucleotide ID:ENST00000266022Re-query CCDS DB by Protein ID:ENSP00000266022
Original member Current member NCBI NM_005777.3 NP_005768.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005777.3Link to Protein Sequence:NP_005768.1Re-query CCDS DB by Nucleotide ID:NM_005777Re-query CCDS DB by Protein ID:NP_005768Link to BLAST:NP_005768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005768.1 1123 P78332-1 1123 100% 0 0

Chromosomal Locations for CCDS 2809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49962642 49962685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49967470 49968748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49972059 49972148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49975323 49975392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49999440 49999513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50048245 50048319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50054335 50054395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50057728 50058003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50058402 50058562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50059649 50059746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50060956 50060998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50061140 50061221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50061462 50061547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50061962 50062108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50065031 50065126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50066242 50066502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50068690 50068764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50070455 50070552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50075201 50075330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50077008 50077133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3372 nt):
ATGTGGGGGGATTCTCGACCTGCTAACAGAACTGGACCTTTTCGTGGGAGCCAAGAAGAAAGGTTTGCTC
CCGGGTGGAACAGGGATTATCCTCCTCCTCCCCTTAAGAGTCATGCTCAAGAGAGACACTCTGGCAACTT
TCCTGGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCGGGGCCTCCTTTTGCAAATGTAGAGGAG
CATTCTTTCAGCTATGGAGCTAGAGACGGACCGCATGGTGACTATCGAGGAGGGGAGGGACCTGGACATG
ATTTCAGGGGGGGAGATTTTTCGTCTTCTGATTTCCAGAGCAGAGATTCATCACAGTTGGACTTCAGGGG
TAGGGACATACATTCTGGGGATTTTCGGGATAGAGAAGGACCACCTATGGACTATAGGGGTGGAGATGGT
ACTTCTATGGATTATAGAGGTAGGGAGGCACCTCATATGAACTACAGAGACAGGGATGCTCACGCTGTTG
ACTTCAGAGGTAGGGATGCTCCTCCATCTGACTTCAGGGGCCGGGGCACTTATGATTTAGATTTTAGAGG
CCGGGATGGATCCCATGCAGATTTTAGGGGAAGGGATTTATCAGATTTGGATTTTAGGGCCAGAGAACAG
TCCCGTTCTGATTTTAGGAATAGAGATGTATCTGATTTGGACTTTAGAGACAAAGACGGAACACAAGTAG
ACTTTAGAGGCCGAGGTTCAGGTACTACTGATCTAGACTTTAGGGACAGGGATACGCCACATTCAGATTT
CAGAGGTAGACACCGATCTAGGACTGATCAGGATTTTAGGGGCAGAGAGATGGGATCTTGTATGGAATTT
AAAGATAGGGAGATGCCCCCTGTGGATCCAAATATTTTGGATTACATTCAGCCCTCTACACAAGATAGAG
AACATTCTGGTATGAATGTGAACAGGAGAGAAGAATCCACACATGACCATACGATAGAAAGGCCTGCTTT
TGGCATTCAGAAGGGAGAATTTGAGCATTCAGAAACAAGAGAAGGAGAAACACAAGGTGTAGCCTTTGAA
CATGAGTCTCCAGCAGACTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGTCACAGCTTTCTG
GACGTGAAGAGCAGAGTTCAGATGCTGGTCTGTTTAAAGAAGAAGGCGGTCTGGACTTTCTTGGGCGGCA
AGACACCGATTACAGAAGCATGGAGTACCGTGATGTGGATCATAGGCTGCCAGGAAGCCAGATGTTTGGC
TATGGCCAGAGCAAGTCTTTTCCAGAGGGCAAAACTGCCCGAGATGCCCAACGGGACCTTCAGGATCAAG
ATTATAGGACCGGCCCAAGTGAGGAGAAACCCAGCAGGCTTATTCGATTAAGTGGGGTACCTGAAGATGC
CACAAAAGAAGAGATTCTTAATGCTTTTCGGACTCCTGATGGCATGCCTGTAAAGAACTTGCAGTTGAAG
GAGTATAACACAGGTTACGACTATGGCTATGTCTGCGTGGAGTTTTCACTCTTGGAAGATGCCATCGGAT
GCATGGAGGCCAACCAGGGAACTCTAATGATCCAGGACAAAGAAGTTACCCTGGAGTATGTATCAAGCCT
GGATTTTTGGTACTGCAAACGATGTAAGGCAAACATTGGTGGGCACCGATCTTCCTGTTCATTCTGCAAG
AACCCAAGAGAAGTGACAGAGGCCAAGCAAGAATTAATAACCTACCCTCAGCCTCAGAAAACATCCATAC
CAGCACCATTGGAAAAACAGCCCAACCAGCCCCTAAGACCAGCTGATAAGGAACCTGAACCCAGGAAGAG
GGAAGAAGGCCAAGAGTCACGCTTAGGACATCAAAAGAGAGAAGCAGAAAGGTATCTGCCTCCTTCTCGA
AGGGAAGGGCCAACTTTCCGAAGAGACCGAGAGAGGGAGTCATGGTCTGGAGAGACACGCCAGGATGGAG
AGAGCAAAACTATCATGCTAAAGCGTATCTATCGTTCCACACCACCTGAGGTGATAGTGGAAGTGCTGGA
GCCCTATGTCCGCCTTACTACTGCCAACGTCCGTATCATCAAGAACAGAACAGGCCCTATGGGGCATACC
TATGGCTTTATTGACCTCGACTCCCATGCGGAAGCTCTTCGTGTGGTGAAGATCTTACAGAACCTTGATC
CGCCATTTAGCATTGATGGGAAGATGGTAGCTGTAAACCTGGCCACTGGAAAACGAAGAAATGATTCTGG
GGACCATTCTGACCACATGCATTACTATCAGGGTAAAAAATATTTCCGAGATAGGAGGGGAGGTGGCAGA
AATTCAGACTGGTCTTCAGATACAAATCGACAAGGACAACAGTCATCATCTGACTGCTACATATATGATT
CTGCTACTGGCTACTATTATGACCCCTTGGCAGGAACTTATTATGACCCCAATACCCAGCAAGAAGTCTA
TGTGCCCCAGGATCCTGGATTACCTGAGGAAGAAGAGATCAAGGAAAAAAAACCCACCAGTCAAGGAAAG
TCAAGTAGCAAGAAGGAAATGTCTAAAAGAGATGGCAAGGAGAAAAAAGACAGAGGAGTGACGAGGTTTC
AGGAAAATGCCAGTGAAGGGAAGGCCCCTGCAGAAGACGTCTTTAAGAAGCCCCTGCCTCCTACTGTGAA
GAAGGAAGAGAGTCCCCCTCCACCTAAAGTGGTAAACCCACTGATCGGCCTCTTGGGTGAATATGGAGGA
GACAGTGACTATGAGGAGGAAGAAGAGGAGGAACAGACCCCTCCCCCACAGCCCCGCACAGCACAGCCCC
AGAAGCGAGAGGAGCAAACCAAGAAGGAGAATGAAGAAGACAAACTCACTGACTGGAATAAACTGGCTTG
TCTGCTTTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTGATCAAACACCAGCAGCTGTCAGACCTGCAC
AAGCAAAACCTGGAAATCCACCGGAAGATAAAACAGTCTGAGCAGGAGCTAGCCTATCTGGAAAGGAGAG
AACGAGAGGGAAAGTTTAAAGGAAGAGGAAATGATCGCAGGGAAAAGCTCCAGTCTTTTGACTCTCCAGA
AAGGAAACGGATTAAGTACTCCAGGGAAACTGACAGTGATCGTAAACTTGTTGATAAAGAAGATATCGAC
ACTAGCAGCAAAGGAGGCTGTGTCCAACAGGCTACTGGCTGGAGGAAAGGGACAGGCCTGGGATATGGCC
ATCCTGGATTGGCTTCATCAGAGGAGGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAG
AACCAGCAAAAGACAGTCCAACGAGACTTACCGAGATGCTGTTCGAAGAGTCATGTTTGCTCGATATAAA
GAACTCGATTAA

Translation (1123 aa):
MWGDSRPANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHSGNFPGRDSLPFDFQGHSGPPFANVEE
HSFSYGARDGPHGDYRGGEGPGHDFRGGDFSSSDFQSRDSSQLDFRGRDIHSGDFRDREGPPMDYRGGDG
TSMDYRGREAPHMNYRDRDAHAVDFRGRDAPPSDFRGRGTYDLDFRGRDGSHADFRGRDLSDLDFRAREQ
SRSDFRNRDVSDLDFRDKDGTQVDFRGRGSGTTDLDFRDRDTPHSDFRGRHRSRTDQDFRGREMGSCMEF
KDREMPPVDPNILDYIQPSTQDREHSGMNVNRREESTHDHTIERPAFGIQKGEFEHSETREGETQGVAFE
HESPADFQNSQSPVQDQDKSQLSGREEQSSDAGLFKEEGGLDFLGRQDTDYRSMEYRDVDHRLPGSQMFG
YGQSKSFPEGKTARDAQRDLQDQDYRTGPSEEKPSRLIRLSGVPEDATKEEILNAFRTPDGMPVKNLQLK
EYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIQDKEVTLEYVSSLDFWYCKRCKANIGGHRSSCSFCK
NPREVTEAKQELITYPQPQKTSIPAPLEKQPNQPLRPADKEPEPRKREEGQESRLGHQKREAERYLPPSR
REGPTFRRDRERESWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVRLTTANVRIIKNRTGPMGHT
YGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGGR
NSDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPGLPEEEEIKEKKPTSQGK
SSSKKEMSKRDGKEKKDRGVTRFQENASEGKAPAEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGG
DSDYEEEEEEEQTPPPQPRTAQPQKREEQTKKENEEDKLTDWNKLACLLCRRQFPNKEVLIKHQQLSDLH
KQNLEIHRKIKQSEQELAYLERREREGKFKGRGNDRREKLQSFDSPERKRIKYSRETDSDRKLVDKEDID
TSSKGGCVQQATGWRKGTGLGYGHPGLASSEEAEGRMRGPSVGASGRTSKRQSNETYRDAVRRVMFARYK
ELD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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