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Report for CCDS28022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28022.1 Public Mus musculus 16 Gnb1l 23 108 98 CCDS HistoryNCBI Gene:13972Re-query CCDS DB by CCDS ID:28022.1Re-query CCDS DB by GeneID:13972See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090086.10 ENSMUSP00000087544.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090086.10Link to Ensembl Protein Viewer:ENSMUSP00000087544.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090086Re-query CCDS DB by Protein ID:ENSMUSP00000087544
Original member Current member EBI ENSMUST00000231621.1 ENSMUSP00000156162.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231621.1Link to Ensembl Protein Viewer:ENSMUSP00000156162.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231621Re-query CCDS DB by Protein ID:ENSMUSP00000156162
Original member Current member NCBI NM_001081682.2 NP_001075151.1 Accepted alive Link to Nucleotide Sequence:NM_001081682.2Link to Protein Sequence:NP_001075151.1Re-query CCDS DB by Nucleotide ID:NM_001081682Re-query CCDS DB by Protein ID:NP_001075151Link to BLAST:NP_001075151.1
Original member Current member NCBI NM_023120.5 NP_075609.2 Accepted alive Link to Nucleotide Sequence:NM_023120.5Link to Protein Sequence:NP_075609.2Re-query CCDS DB by Nucleotide ID:NM_023120Re-query CCDS DB by Protein ID:NP_075609Link to BLAST:NP_075609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075151.1 326 Q9EQ15-1 326 100% 0 0
NP_075609.2 326 Q9EQ15-1 326 100% 0 0

Chromosomal Locations for CCDS 28022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18540451 18540575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18540972 18541097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18544111 18544273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18548093 18548191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18552367 18552582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18564035 18564286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCAGCCCTGTTCCCACCACCGCCTGGTCCCAGATTTGTCCTCCGAGGCACACAGTCGGCTGTGAACA
CGCTCCATTTCTGCCCACCATCCCAAGCTGCAGGGAACCCACTTCTCTTCTCAGGGTCTCAGAATGGCCT
AGTACATATCTGGAGCCTACAAACAAGAAGAATAGTTACCACTCTAAATGGCCATGGGGGCCAGGGTGTA
ATCTGGCTGAAGACACTGCCACAGGGACACCAGCTCCTCAGCCAGGGTCGAGACCTGCGGCTGTGCCTGT
GGGACCTGGAGGAGGGCAGGAACACCATCATGGACTCAGTTCAGCTGGACAGTGTGGGCTTCTGCAGGGG
CTCCATCCTGGTCAGGGGACAGCAGTGCTGGATGCTTGCTGTGCCAGGGAAGGGCAGCGACGAGGTTCAG
ATTCTGGAGATGCCATCCAAGACGTCAGTGTGCACCCTGAAGCCGGAGGCCGATGCCAGGCCAGGCATGC
CCATGTGCCTGGGGCTGTGGCAGACTAACTCCAGTCTCCGCCCCCTCCTTCTGGCTGGCTATGAGGATGG
ATCAGTAACCCTGTGGGACATCTCAGAGCGGAAGGTGTGCAGCCAAATCACCTGCCATGAAGAGCCTGTC
ATGGGCCTCGACTTCGACTCTCAGAAGGCCAAGGGCATCTCTGGCTCTGCTGGGAAGGTACTGGCTGTCT
GGAGTCTGGACGATCAGCAGTCCCTGCAGGTGAAGAAGACTCATGAACTCACCAATCCTGGAATTGCCGA
AGTCACCATCCGGCCAGACCACAAGATCTTAGCCACAGCAGGCTGGGACCATCGCATCCGTGTGTTTCAC
TGGAGGACAATGAAACCGTTAGCTGTTCTGGCTTTCCACAGCGCTCCTGTGTACTGCGTGGCCTTTGCTG
CTGATGGCTTGCTTGCTGCGGGGTCCAAGGACCAGCGTATCAGCATCTGGTCACTCTACCCCTGCCCATG
A

Translation (326 aa):
MAALFPPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGV
IWLKTLPQGHQLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDEVQ
ILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDISERKVCSQITCHEEPV
MGLDFDSQKAKGISGSAGKVLAVWSLDDQQSLQVKKTHELTNPGIAEVTIRPDHKILATAGWDHRIRVFH
WRTMKPLAVLAFHSAPVYCVAFAADGLLAAGSKDQRISIWSLYPCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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