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Report for CCDS27923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27923.1 Public Mus musculus 16 Nmral1 23 108 98 CCDS HistoryNCBI Gene:67824Re-query CCDS DB by CCDS ID:27923.1Re-query CCDS DB by GeneID:67824See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079130.13 ENSMUSP00000078132.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079130.13Link to Ensembl Protein Viewer:ENSMUSP00000078132.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079130Re-query CCDS DB by Protein ID:ENSMUSP00000078132
Original member Current member NCBI NM_026393.2 NP_080669.1 Accepted alive Link to Nucleotide Sequence:NM_026393.2Link to Protein Sequence:NP_080669.1Re-query CCDS DB by Nucleotide ID:NM_026393Re-query CCDS DB by Protein ID:NP_080669Link to BLAST:NP_080669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080669.1 309 Q8K2T1-1 309 100% 0 0

Chromosomal Locations for CCDS 27923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4711424 4711603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4713640 4713830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4714417 4714666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4715601 4715630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4716297 4716535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4718895 4718934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCTGATAGGAAACTGGTGGTGGTTTTTGGAGCCACAGGTGCGCAAGGTGGCTCTGTGGCCCGTGCAT
TGCTAGAAGATGGGACATTCAGGATTCGAGTGGTAACAAGAAACCCTGAGCAGAGGGCAGCCAAAGAGCT
GAAGCAGCAAGGTGCTGAGGTAGTGCGAGGAGACCAGGACGATGCAGCTAGCATGGAGCTGGCCTTGGCT
GGAGCCCATGCCACCTTCATTGTGACCAATTACTGGGAGACGTGCAGCCAGGACCGAGAAGTGCAGCAGC
CCCACCAGTGGGACCAAGTATTCAAACAAGGCAAGCTTCTAGCCGATCTAGCCAAACGCTTGGGCCTCCA
TTATGTAGTGTACAGTGGCCTGGAGAACATCAGGAAGCTGACGGCTGGGAAGCTGGCCGCAGGACACTTT
GATGGCAAAGGGGAGGTGGAGGAATACTTCCGAGACATCGGTGTTCCCATGACCAGTGTGCGGCTGCCTT
GCTATTTCGAGAATCTCCTTTCCTATTTCCTGCCCCAGAAAGCTGCAGATGGAAAAAGCTTCTTGCTGGA
CTTGCCCATGGGTGACGTCCCCATGGATGGAATGTCTGTGAGTGACCTGGGCCCCGTGGTGCTCAGCTTG
CTGAAGAAGCCAGAAGAGTACGTAGGGCAGAACATCGGGCTCAGTACCTGCAGGCACACCGCAGAGGAGT
ATGCTGCCTTGCTTAGCAAGCACACTGGCAAGGCTGTACATCATGCCAAGACAACTCCTGAGGATTACGA
GAAACTTGGTTTCCAGGGGGCTCAAGACTTGGCCAACATGTTCCGTTTCTACACCCTGAAACCTGATCGG
AACATTCATCTGACCCTGCGACTCAACCCCAAAGCCCAGACACTGGACCAGTGGCTGGAGCAGCACAAAG
GGGACTTTGCACAGCTGTGA

Translation (309 aa):
MADRKLVVVFGATGAQGGSVARALLEDGTFRIRVVTRNPEQRAAKELKQQGAEVVRGDQDDAASMELALA
GAHATFIVTNYWETCSQDREVQQPHQWDQVFKQGKLLADLAKRLGLHYVVYSGLENIRKLTAGKLAAGHF
DGKGEVEEYFRDIGVPMTSVRLPCYFENLLSYFLPQKAADGKSFLLDLPMGDVPMDGMSVSDLGPVVLSL
LKKPEEYVGQNIGLSTCRHTAEEYAALLSKHTGKAVHHAKTTPEDYEKLGFQGAQDLANMFRFYTLKPDR
NIHLTLRLNPKAQTLDQWLEQHKGDFAQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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