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Report for CCDS27896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27896.1 Public Mus musculus 15 Hoxc5 23 108 98 CCDS HistoryNCBI Gene:15424Re-query CCDS DB by CCDS ID:27896.1Re-query CCDS DB by GeneID:15424See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001709.2 ENSMUSP00000001709.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001709.2Link to Ensembl Protein Viewer:ENSMUSP00000001709.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000001709Re-query CCDS DB by Protein ID:ENSMUSP00000001709
Original member Current member NCBI NM_175730.5 NP_783857.1 Accepted alive Link to Nucleotide Sequence:NM_175730.5Link to Protein Sequence:NP_783857.1Re-query CCDS DB by Nucleotide ID:NM_175730Re-query CCDS DB by Protein ID:NP_783857Link to BLAST:NP_783857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783857.1 222 P32043 222 100% 0 0

Chromosomal Locations for CCDS 27896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103014082 103014535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103015228 103015442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGAGCTCCTACGTAGCCAATTCATTCTATAAGCAGAGCCCCAATATCCCTGCCTATAACATGCAAACTT
GTGGGAACTATGGATCGGCCTCAGAGGTGCAGGCATCCAGGTACTGCTACGGCGGATTGGACTTAAGCAT
CACTTTCCCACCGCCTGCGCCTTCCAACTCTCTCCACGGGGTAGACATGGCTGCCAACCCCCGGGCTCAC
CCCGACCGCCCCGCCTGCAGCGCCGCGGCCGCTCCGGGACACGCTCTGGGCAGAGACGAAGCGGCTCCTC
TGAACCCTGGGATGTACAGTCAGAAGGCGGCTCGCCCGGCGCTGGAGGAGCGAGCTAAGAGCAGTGGGGA
GATCAAAGAGGAGCAGGCGCAGACAGGGCAGCCTGCCGGACTGAGCCAGCCACCGGCCCCGCCACAGATT
TACCCGTGGATGACCAAACTGCACATGAGCCACGAGACGGATGGCAAGCGGTCCCGAACCAGTTACACGC
GCTACCAGACCCTGGAACTCGAGAAAGAATTCCATTTTAACCGCTACCTCACTCGCCGCAGGCGCATAGA
GATTGCCAACAACTTGTGTCTCAACGAGAGACAGATCAAGATCTGGTTCCAGAACCGCAGGATGAAGTGG
AAGAAAGATTCCAAAATGAAGAGCAAAGAAGCTCTTTAG

Translation (222 aa):
MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAH
PDRPACSAAAAPGHALGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQI
YPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKW
KKDSKMKSKEAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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