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Report for CCDS27758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27758.1 Public Mus musculus 15 Cpne8 23 108 98 CCDS HistoryNCBI Gene:66871Re-query CCDS DB by CCDS ID:27758.1Re-query CCDS DB by GeneID:66871See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064391.11 ENSMUSP00000067774.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064391.11Link to Ensembl Protein Viewer:ENSMUSP00000067774.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064391Re-query CCDS DB by Protein ID:ENSMUSP00000067774
Original member Current member NCBI NM_025815.2 NP_080091.1 Accepted alive Link to Nucleotide Sequence:NM_025815.2Link to Protein Sequence:NP_080091.1Re-query CCDS DB by Nucleotide ID:NM_025815Re-query CCDS DB by Protein ID:NP_080091Link to BLAST:NP_080091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080091.1 577 Q9DC53 577 100% 0 0

Chromosomal Locations for CCDS 27758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 90488987 90489175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90497065 90497138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90499885 90499942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90501411 90501513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90509495 90509622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90515908 90516089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90521908 90521954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90540232 90540293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90541257 90541310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90551974 90552049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90568249 90568290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90569460 90569564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90571945 90572048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90584878 90584941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90601813 90601889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90615111 90615150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90619632 90619735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90648578 90648624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90649243 90649283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90679168 90679304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGTGGGCTCGGGACAAGTGCTCCGTTCCTCAGCTCGAGATGGACAGCCGCTACACCAGCGCCACGGGCA
TCGGGGACTTGAACCAGCTGAGTGCGGCCATCCCCGCCACACGAGTGGAGGTGTCAGTGTCCTGCAGAAA
TCTCCTTGATAGAGATACATTTTCTAAGTCGGATCCAATTTGTGTCCTATATACACAAGCAGTTGGGAAT
AAAGAATGGAGAGAGTTTGGAAGAACTGAAGTGATCGATAATACTTTGAATCCTGATTTTGTAAGAAAGT
TTATCCTGGATTATTTCTTTGAAGAAAGAGAGAATCTTCGTTTTGACTTATATGATGTTGATTCTAAGAG
TCCCAACTTGTCCAAACATGACTTTCTGGGACAAGTGTTTTGTACATTGGGGGAGATTGTTGGTTCACAG
GGAAGTCGCCTGGAAAAGCCAATAGTAGGAATTCCAGGCAGGAAATGTGGGACAATCATACTGACGGCAG
AGGAGCTAAACTGCTGCAGGGATGCTGTCTTGATGCAGTTCTGTGCAAACAAATTGGATAAGAAGGATTT
CTTTGGGAAGTCAGATCCTTTCCTGGTATTTTATCGAAGCAATGAGGATGGAAGCTTTACAATTTGCCAC
AAGACAGAAGTGGTCAAAAACACTCTAAATCCTGTGTGGCAAGCGTTCAAGATCTCAGTGCGAGCATTGT
GCAATGGGGACTATGACAGAACAATCAAGGTAGAAGTGTACGACTGGGACCGAGACGGGAGTCATGATTT
CATTGGAGAATTCACAACAAGCTATCGGGAGCTCGCAAGAGGGCAGTCACAATTCAACGTCTATGAGGTG
GTGAATCCCAAAAAGAAAGGAAAAAAGAAAAAATACACCAATTCAGGAACAGTAACCTTATTGTCCTTCT
TGGTGGAAACAGAAGTCTCCTTCCTGGACTATATTAAAGGAGGAACGCAGATCAACTTCACGGTGGCCAT
TGATTTTACAGCATCAAATGGAAACCCTGCCCAGCCAACTTCTCTCCACTATATGAACCCTTACCAACTG
AATGCCTATGGAATGGCACTGAAGGCTGTAGGAGAAATCGTTCAAGATTATGACAGTGATAAGATGTTCC
CAGCCCTGGGTTTTGGTGCAAAGCTGCCTCCAGATGGAAGGATATCTCACGAGTTTGCCCTGAATGGCAA
CCCTCAGAATCCTTACTGTGATGGCATTGAAGGTGTCATGGAAGCTTACTATAGAAGTCTGAAGTCTGTC
CAGTTGTATGGGCCAACCAACTTTGCTCCCGTAATAAACCACGTAGCAAGATACGCATCCTCTGTAAAAG
ATGGCTCCCAGTACTTTGTGCTTCTCATTGTGACGGACGGCGTCATCTCAGATATGGCTCAAACTAAAGA
ATCCATAGTTAATGCCTCAAAGCTTCCCATGTCAATAATAATAGTAGGTGTGGGACCTGCAGAATTTGAT
GCAATGGTTGAATTGGATGGAGATGATGTAAGAGTTTCCTCCAGAGGGAAATATGCTGAAAGAGATATTG
TACAGTTTGTGCCGTTCAGGGATTATATTGACAGAAGTGGAAACCACATACTCAGCATGGCGAGACTGGC
CAAAGATGTCTTAGCTGAGATCCCAGAGCAGTTCCTTTCCTACATGAGAGCCAGAGGAATCAAGCCATCA
CCGGCGCCCCCGCCGTACACCCCTCCTACACACGTGCTGCAGACGCAAATATGA

Translation (577 aa):
MWARDKCSVPQLEMDSRYTSATGIGDLNQLSAAIPATRVEVSVSCRNLLDRDTFSKSDPICVLYTQAVGN
KEWREFGRTEVIDNTLNPDFVRKFILDYFFEERENLRFDLYDVDSKSPNLSKHDFLGQVFCTLGEIVGSQ
GSRLEKPIVGIPGRKCGTIILTAEELNCCRDAVLMQFCANKLDKKDFFGKSDPFLVFYRSNEDGSFTICH
KTEVVKNTLNPVWQAFKISVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTSYRELARGQSQFNVYEV
VNPKKKGKKKKYTNSGTVTLLSFLVETEVSFLDYIKGGTQINFTVAIDFTASNGNPAQPTSLHYMNPYQL
NAYGMALKAVGEIVQDYDSDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSV
QLYGPTNFAPVINHVARYASSVKDGSQYFVLLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAEFD
AMVELDGDDVRVSSRGKYAERDIVQFVPFRDYIDRSGNHILSMARLAKDVLAEIPEQFLSYMRARGIKPS
PAPPPYTPPTHVLQTQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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