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Report for CCDS2757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2757.1 Public Homo sapiens 3 CSPG5 24 110 108 CCDS HistoryNCBI Gene:10675Re-query CCDS DB by CCDS ID:2757.1Re-query CCDS DB by GeneID:10675See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2757.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264723.9 ENSP00000264723.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264723.9Link to Ensembl Protein Viewer:ENSP00000264723.4Re-query CCDS DB by Nucleotide ID:ENST00000264723Re-query CCDS DB by Protein ID:ENSP00000264723
Original member Current member NCBI NM_006574.4 NP_006565.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006574.4Link to Protein Sequence:NP_006565.2Re-query CCDS DB by Nucleotide ID:NM_006574Re-query CCDS DB by Protein ID:NP_006565Link to BLAST:NP_006565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006565.2 539 O95196-2 539 100% 0 0

Chromosomal Locations for CCDS 2757.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 47562600 47562761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47569152 47569227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47572686 47572874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47576833 47577928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47578597 47578693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGGGCGAGCCGGGGGCGGGGGCCCGGGCCGGGGGCCGCCGCCACTGCTGCTGTTTCTGGGGGCCGCGC
TGGTCCTGGCCTCTGGGGCCGTGCCGGCGCGTGAGGCGGGCAGCGCGGTTGAGGCCGAAGAGCTGGTGAA
GGGCAGCCCGGCGTGGGAGCCGCCTGCCAACGACACGCGGGAAGAAGCCGGCCCACCAGCGGCTGGGGAA
GATGAGGCGTCGTGGACGGCGCCCGGTGGCGAGCTGGCCGGGCCAGAAGAGGTGCTGCAGGAGTCGGCTG
CGGTGACCGGCACCGCCTGGCTGGAAGCTGACAGCCCAGGCCTGGGAGGAGTGACCGCAGAGGCGGGCAG
CGGCGATGCCCAGGCCCTTCCAGCTACGCTCCAGGCTCCCCACGAGGTCCTCGGGCAGTCAATCATGCCC
CCTGCCATTCCTGAGGCTACAGAGGCCAGCGGGCCACCCTCCCCCACCCCCGGCGACAAGCTGAGCCCAG
CTTCTGAACTCCCCAAGGAGAGCCCCTTGGAGGTTTGGCTGAACCTGGGGGGCAGCACACCCGACCCTCA
AGGGCCAGAGCTGACTTACCCATTTCAGGGCACCCTGGAGCCCCAACCGGCATCAGATATCATTGACATC
GACTACTTCGAAGGACTGGATGGTGAGGGTCGTGGCGCAGATCTGGGGAGCTTCCCAGGGTCACCAGGAA
CCTCAGAGAACCACCCTGATACTGAGGGAGAGACCCCTTCCTGGAGCCTGCTTGACTTATACGATGATTT
CACCCCCTTCGATGAATCTGATTTCTACCCCACCACATCCTTTTATGATGACTTGGATGAAGAGGAGGAG
GAAGAGGAGGATGACAAAGATGCAGTAGGAGGTGGAGACCTAGAAGATGAAAATGAGCTTCTAGTGCCCA
CTGGGAAGCCTGGTCTGGGGCCCGGGACAGGCCAGCCCACCAGTCGGTGGCATGCTGTCCCTCCACAGCA
CACTCTGGGGTCGGTCCCCGGCAGCAGCATCGCCCTCAGGCCCCGCCCAGGAGAGCCAGGCAGGGACTTG
GCCTCCAGTGAAAATGGCACTGAGTGCCGCAGTGGCTTTGTGCGGCATAACGGCTCCTGCCGGTCAGTGT
GCGACCTCTTCCCAAGTTACTGTCACAATGGCGGCCAGTGCTACCTGGTGGAGAACATAGGGGCCTTCTG
CAGGTGCAACACGCAGGACTACATCTGGCACAAGGGGATGCGCTGCGAGTCCATCATCACCGACTTCCAG
GTGATGTGCGTGGCCGTGGGCTCGGCTGCCCTCGTCCTGCTCCTGCTCTTCATGATGACGGTGTTCTTTG
CCAAGAAGCTCTACCTGCTCAAGACGGAGAATACCAAGCTGCGTAGGACCAACAAATTCCGGACCCCATC
TGAGCTCCACAATGATAACTTCTCCCTCTCCACCATTGCCGAGGGCTCTCACCCAAATGATGATCCTAGT
GCTCCCCACAAAATCCAGGAGGTTCTCAAGTCCTGCCTGAAAGAGGAGGAGTCATTTAACATCCAGAACT
CCATGTCGCCCAAACTTGAGGGTGGCAAAGGTGACCAGGCTGACTTGGATGTGAACTGTCTTCAGAATAA
TTTAACCTAA

Translation (539 aa):
MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGE
DEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMP
PAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDI
DYFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEE
EEEDDKDAVGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDL
ASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPNDDPS
APHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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