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Report for CCDS2715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2715.1 Public Homo sapiens 3 ZKSCAN7 24 110 108 CCDS HistoryNCBI Gene:55888Re-query CCDS DB by CCDS ID:2715.1Re-query CCDS DB by GeneID:55888See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2715.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273320.7 ENSP00000273320.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273320.7Link to Ensembl Protein Viewer:ENSP00000273320.3Re-query CCDS DB by Nucleotide ID:ENST00000273320Re-query CCDS DB by Protein ID:ENSP00000273320
Original member Current member EBI ENST00000426540.6 ENSP00000395524.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000426540.6Link to Ensembl Protein Viewer:ENSP00000395524.1Re-query CCDS DB by Nucleotide ID:ENST00000426540Re-query CCDS DB by Protein ID:ENSP00000395524
Original member Current member NCBI NM_001288590.2 NP_001275519.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001288590.2Link to Protein Sequence:NP_001275519.1Re-query CCDS DB by Nucleotide ID:NM_001288590Re-query CCDS DB by Protein ID:NP_001275519Link to BLAST:NP_001275519.1
Original member Current member NCBI NM_018651.4 NP_061121.2 Accepted alive Link to Nucleotide Sequence:NM_018651.4Link to Protein Sequence:NP_061121.2Re-query CCDS DB by Nucleotide ID:NM_018651Re-query CCDS DB by Protein ID:NP_061121Link to BLAST:NP_061121.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275519.1 754 Q9P0L1-1 754 100% 0 0
NP_061121.2 754 Q9P0L1-1 754 100% 0 0

Chromosomal Locations for CCDS 2715.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44557048 44557470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44565487 44565655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44567912 44568003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44568307 44568433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44569922 44571375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGACCACTGCAGGCAGGGGAAATTTAGGCCTCATCCCCAGGAGCACTGCTTTCCAGAAGCAAGAGGGGC
GCCTGACTGTGAAGCAGGAGCCAGCAAACCAGACCTGGGGGCAGGGCAGCAGTCTCCAGAAGAACTATCC
TCCTGTCTGCGAAATCTTCCGGCTACACTTCAGGCAATTGTGTTACCACGAGATGTCTGGGCCGCAGGAA
GCATTGAGCCGGCTTCGGGAGCTCTGCCGCTGGTGGCTCATGCCAGAGGTGCACACCAAGGAGCAGATCC
TGGAGCTGCTGGTGCTTGAGCAGTTCCTGAGCATCCTCCCTGGGGAGCTCCGGACCTGGGTGCAGCTGCA
TCACCCTGAGAGTGGTGAGGAGGCTGTGGCTGTGGTGGAGGATTTCCAGAGACACCTCAGTGGATCAGAG
GAGGTTTCAGCCCCAGCACAGAAACAGGAAATGCATTTTGAGGAGACAACAGCTCTGGGTACAACAAAGG
AATCTCCTCCTACCTCACCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACCTGGAGCCTCCTTATGACCC
AGGGACACACCACCTCCCCAGTGGGGACTTCGCTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTG
GGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAGGATACTGTGGCATATG
AGGACCTATCTGTAGACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTG
GAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGGCAGGTGAGAACATGATGAAGGGTTCAGAG
TTGACTCCAAAGCAGGAATTTTTTAAAGGATCAGAGTCATCTAACAGGACATCAGGGGGACTCTTTGGGG
TGGTTCCTGGGGCAGCAGAGACTGGAGATGTTTGTGAAGATACTTTCAAGGAGTTAGAAGGACAAACCTC
AGATGAAGAAGGGAGCAGACTAGAAAATGATTTCTTGGAAATAACAGATGAAGATAAGAAAAAATCCACA
AAAGACAGATATGACAAATATAAGGAAGTTGGGGAACATCCACCTCTGTCTTCCAGTCCTGTTGAACATG
AAGGAGTTTTAAAGGGACAGAAATCCTATCGATGTGATGAATGTGGCAAAGCTTTCAATCGGAGTTCTCA
CCTTATTGGCCATCAGAGAATCCACACTGGAGAGAAACCCTATGAGTGTAATGAGTGTGGGAAGACCTTC
AGGCAAACCTCCCAGCTCATTGTTCATCTCAGAACCCACACAGGGGAAAAACCCTATGAATGCAGTGAGT
GTGGAAAGGCCTATAGGCACAGCTCCCATCTCATTCAACACCAGAGACTCCATAATGGGGAGAAACCCTA
TAAATGTAATGAATGTGCAAAAGCCTTTACTCAGAGTTCCCGACTCACTGACCACCAGAGAACCCATACT
GGGGAGAAACCTTATGAATGCAATGAGTGTGGAGAGGCATTCATTCGAAGCAAAAGTCTTGCTCGACATC
AGGTCCTGCACACTGGTAAGAAACCTTACAAATGCAATGAGTGTGGGAGAGCATTCTGTTCCAATAGAAA
TCTCATTGACCATCAGAGAATCCACACTGGGGAGAAGCCTTATGAGTGTAGTGAATGTGGCAAAGCCTTC
AGTCGGAGTAAATGTCTTATTCGACATCAGAGCCTCCATACTGGGGAAAAGCCATACAAATGTAGTGAAT
GTGGGAAAGCCTTCAATCAGAACTCTCAACTCATTGAGCATGAGCGAATTCATACTGGAGAAAAACCTTT
TGAATGTAGCGAGTGTGGTAAGGCATTTGGTCTGAGTAAATGTCTTATTCGGCACCAGAGACTTCACACG
GGTGAAAAGCCCTATAAATGCAATGAGTGTGGAAAATCCTTCAATCAAAACTCACACCTTATTATACACC
AGAGAATTCACACTGGTGAGAAACCCTATGAATGTAATGAGTGTGGGAAGGTATTCAGTTATAGCTCCAG
CCTTATGGTACATCAGAGAACCCATACTGGGGAAAAACCCTATAAATGCAATGATTGTGGGAAAGCTTTT
AGTGACAGCTCACAGCTTATTGTACACCAGAGAGTCCACACCGGAGAGAAACCTTATGAATGTAGTGAAT
GTGGGAAAGCCTTTAGTCAGCGTTCCACTTTTAATCACCACCAGCGAACTCACACTGGAGAGAAGTCCTC
AGGTCTGGCTTGGTCAGTTTCTTAA

Translation (754 aa):
MTTAGRGNLGLIPRSTAFQKQEGRLTVKQEPANQTWGQGSSLQKNYPPVCEIFRLHFRQLCYHEMSGPQE
ALSRLRELCRWWLMPEVHTKEQILELLVLEQFLSILPGELRTWVQLHHPESGEEAVAVVEDFQRHLSGSE
EVSAPAQKQEMHFEETTALGTTKESPPTSPLSGGSAPGAHLEPPYDPGTHHLPSGDFAQCTSPVPTLPQV
GNSGDQAGATVLRMVRPQDTVAYEDLSVDYTQKKWKSLTLSQRALQWNMMPENHHSMASLAGENMMKGSE
LTPKQEFFKGSESSNRTSGGLFGVVPGAAETGDVCEDTFKELEGQTSDEEGSRLENDFLEITDEDKKKST
KDRYDKYKEVGEHPPLSSSPVEHEGVLKGQKSYRCDECGKAFNRSSHLIGHQRIHTGEKPYECNECGKTF
RQTSQLIVHLRTHTGEKPYECSECGKAYRHSSHLIQHQRLHNGEKPYKCNECAKAFTQSSRLTDHQRTHT
GEKPYECNECGEAFIRSKSLARHQVLHTGKKPYKCNECGRAFCSNRNLIDHQRIHTGEKPYECSECGKAF
SRSKCLIRHQSLHTGEKPYKCSECGKAFNQNSQLIEHERIHTGEKPFECSECGKAFGLSKCLIRHQRLHT
GEKPYKCNECGKSFNQNSHLIIHQRIHTGEKPYECNECGKVFSYSSSLMVHQRTHTGEKPYKCNDCGKAF
SDSSQLIVHQRVHTGEKPYECSECGKAFSQRSTFNHHQRTHTGEKSSGLAWSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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