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Report for CCDS26831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26831.1 Public Mus musculus 14 Oxsm 23 108 98 CCDS HistoryNCBI Gene:71147Re-query CCDS DB by CCDS ID:26831.1Re-query CCDS DB by GeneID:71147See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022311.11 ENSMUSP00000022311.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022311.11Link to Ensembl Protein Viewer:ENSMUSP00000022311.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022311Re-query CCDS DB by Protein ID:ENSMUSP00000022311
Original member Current member EBI ENSMUST00000112624.2 ENSMUSP00000108243.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112624.2Link to Ensembl Protein Viewer:ENSMUSP00000108243.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112624Re-query CCDS DB by Protein ID:ENSMUSP00000108243
Original member Current member EBI ENSMUST00000112625.8 ENSMUSP00000108244.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112625.8Link to Ensembl Protein Viewer:ENSMUSP00000108244.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112625Re-query CCDS DB by Protein ID:ENSMUSP00000108244
Original member Current member NCBI NM_001359882.1 NP_001346811.1 Accepted alive Link to Nucleotide Sequence:NM_001359882.1Link to Protein Sequence:NP_001346811.1Re-query CCDS DB by Nucleotide ID:NM_001359882Re-query CCDS DB by Protein ID:NP_001346811Link to BLAST:NP_001346811.1
Original member Current member NCBI NM_001359883.1 NP_001346812.1 Accepted alive Link to Nucleotide Sequence:NM_001359883.1Link to Protein Sequence:NP_001346812.1Re-query CCDS DB by Nucleotide ID:NM_001359883Re-query CCDS DB by Protein ID:NP_001346812Link to BLAST:NP_001346812.1
Original member Current member NCBI NM_027695.4 NP_081971.1 Accepted alive Link to Nucleotide Sequence:NM_027695.4Link to Protein Sequence:NP_081971.1Re-query CCDS DB by Nucleotide ID:NM_027695Re-query CCDS DB by Protein ID:NP_081971Link to BLAST:NP_081971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346811.1 459 Q9D404 459 100% 0 0
NP_001346812.1 459 Q9D404 459 100% 0 0
NP_081971.1 459 Q9D404 459 100% 0 0

Chromosomal Locations for CCDS 26831.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 16240668 16241070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16241791 16242767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGTTGTCAAAATGCTTGCAACATTTTCTAAAAGCCACAATCTCCCATCCATATCCAGCGTCATATTCTT
GGTTAATAAGCAAACACAGATTTTATGGAACTGTGCCAGCAGCCATGTTGCGCAGACGAGTTGTCATCAC
AGGCATTGGCCTAGTGACACCACTTGGCGTTGGGACTCAACTAGTTTGGGATCGGCTTCTCCGAGGAGAA
AGTGGAATTGTTTCTGTGGTTGGTGATGAGTACAAGAATATCCCTTGCAGTGTAGCTGCTTATGTACCAA
GAGGTCCACATGAAGGTCAGTTTAATGAAGAAAACTTTGTGTCCAAATCAGATGCCAAGTCCATGTCTTC
TTCCACCATCATGGCTGTTGGGGCAGCAGAGTTGGCCCTGAAAGACTCCGGCTGGCATCCGAAACGAGAA
GCAGATCAGGTGGCTACTGGCGTTGCCATTGGCATGGGCATGGTTCCTCTTGAAGTTATTTCTGAAACTG
CTTTGCTGTTTCAGACCAAAGGTTATAATAAAGTCAGCCCATTCTTTGTCCCTAAGATTCTGATCAATAT
GGCTGCAGGCCAGGTTAGCATTCGCTACAAACTCAAGGGCCCCAATCACTCAGTGTCCACAGCCTGCACC
ACAGGTGCACATGCTGTGGGAGACTCCTTTAGATTCATAGCCCATGGTGACGCAGATGTGATGGTGGCTG
GGGGCACAGACTCTTGCATTAGTCCATTATCTCTCGCTGGGTTTTCCAGAGCCCGGGCTCTGAGCTCAAA
CCCAGATCCTAAGCTAGCCTGCCGGCCGTTTCATCCAGAGAGAGATGGTTTTGTCATGGGTGAGGGAGCT
GCTGTGCTGGTGCTGGAAGAACATGAGCATGCTGTTCAGAGAGGAGCTCGGATCTACGCAGAAATTTTGG
GTTATGGACTCTCGGGTGATGCCGGTCACATAACTGCCCCCGATCCCGAAGGAGAAGGTGCTTTAAGATG
CATGGCTGCTGCTGTAAAAGATGCAGGCGTATCACCTGAGCAGATATCCTATGTCAACGCACATGCCACT
TCCACACCACTGGGTGATGCCGCTGAGAACAGAGCCATCAAGAGGCTCTTTAGGGACCATGCTTGTGCCC
TTGCCATATCCTCCACAAAGGGAGCCACTGGGCATCTTCTGGGTGCTGCAGGGGCAGTTGAGGCAACTTT
TACTGCACTGGCTTGTTACCACCAGAAACTCCCACCAACTTTAAACCTGGATTGTACAGAGCCTGAATTT
GATCTCAATTATGTTCCACTGGAGTCACAGGAATGGAAAGCTGAGGGTCGGTGTATTGGACTCACCAATT
CCTTTGGGTTTGGTGGTACTAATGCAACTCTTTGTATTGCTGGCATGTAA

Translation (459 aa):
MLSKCLQHFLKATISHPYPASYSWLISKHRFYGTVPAAMLRRRVVITGIGLVTPLGVGTQLVWDRLLRGE
SGIVSVVGDEYKNIPCSVAAYVPRGPHEGQFNEENFVSKSDAKSMSSSTIMAVGAAELALKDSGWHPKRE
ADQVATGVAIGMGMVPLEVISETALLFQTKGYNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVSTACT
TGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSSNPDPKLACRPFHPERDGFVMGEGA
AVLVLEEHEHAVQRGARIYAEILGYGLSGDAGHITAPDPEGEGALRCMAAAVKDAGVSPEQISYVNAHAT
STPLGDAAENRAIKRLFRDHACALAISSTKGATGHLLGAAGAVEATFTALACYHQKLPPTLNLDCTEPEF
DLNYVPLESQEWKAEGRCIGLTNSFGFGGTNATLCIAGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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