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Report for CCDS26831.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
26831.1 |
Public |
Mus musculus |
14 |
Oxsm |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:71147](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:26831.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:71147](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 26831.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000022311.11 |
ENSMUSP00000022311.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000022311.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000022311.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000022311](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000022311](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000112624.2 |
ENSMUSP00000108243.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000112624.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000108243.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000112624](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000108243](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000112625.8 |
ENSMUSP00000108244.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000112625.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000108244.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000112625](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000108244](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359882.1 |
NP_001346811.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359882.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001346811.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359882](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001346811](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001346811.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359883.1 |
NP_001346812.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359883.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001346812.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359883](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001346812](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001346812.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_027695.4 |
NP_081971.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_027695.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_081971.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_027695](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_081971](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_081971.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 26831.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1380 nt): ATGTTGTCAAAATGCTTGCAACATTTTCTAAAAGCCACAATCTCCCATCCATATCCAGCGTCATATTCTT GGTTAATAAGCAAACACAGATTTTATGGAACTGTGCCAGCAGCCATGTTGCGCAGACGAGTTGTCATCAC AGGCATTGGCCTAGTGACACCACTTGGCGTTGGGACTCAACTAGTTTGGGATCGGCTTCTCCGAGGAGAA AGTGGAATTGTTTCTGTGGTTGGTGATGAGTACAAGAATATCCCTTGCAGTGTAGCTGCTTATGTACCAA GAGGTCCACATGAAGGTCAGTTTAATGAAGAAAACTTTGTGTCCAAATCAGATGCCAAGTCCATGTCTTC TTCCACCATCATGGCTGTTGGGGCAGCAGAGTTGGCCCTGAAAGACTCCGGCTGGCATCCGAAACGAGAA GCAGATCAGGTGGCTACTGGCGTTGCCATTGGCATGGGCATGGTTCCTCTTGAAGTTATTTCTGAAACTG CTTTGCTGTTTCAGACCAAAGGTTATAATAAAGTCAGCCCATTCTTTGTCCCTAAGATTCTGATCAATAT GGCTGCAGGCCAGGTTAGCATTCGCTACAAACTCAAGGGCCCCAATCACTCAGTGTCCACAGCCTGCACC ACAGGTGCACATGCTGTGGGAGACTCCTTTAGATTCATAGCCCATGGTGACGCAGATGTGATGGTGGCTG GGGGCACAGACTCTTGCATTAGTCCATTATCTCTCGCTGGGTTTTCCAGAGCCCGGGCTCTGAGCTCAAA CCCAGATCCTAAGCTAGCCTGCCGGCCGTTTCATCCAGAGAGAGATGGTTTTGTCATGGGTGAGGGAGCT GCTGTGCTGGTGCTGGAAGAACATGAGCATGCTGTTCAGAGAGGAGCTCGGATCTACGCAGAAATTTTGG GTTATGGACTCTCGGGTGATGCCGGTCACATAACTGCCCCCGATCCCGAAGGAGAAGGTGCTTTAAGATG CATGGCTGCTGCTGTAAAAGATGCAGGCGTATCACCTGAGCAGATATCCTATGTCAACGCACATGCCACT TCCACACCACTGGGTGATGCCGCTGAGAACAGAGCCATCAAGAGGCTCTTTAGGGACCATGCTTGTGCCC TTGCCATATCCTCCACAAAGGGAGCCACTGGGCATCTTCTGGGTGCTGCAGGGGCAGTTGAGGCAACTTT TACTGCACTGGCTTGTTACCACCAGAAACTCCCACCAACTTTAAACCTGGATTGTACAGAGCCTGAATTT GATCTCAATTATGTTCCACTGGAGTCACAGGAATGGAAAGCTGAGGGTCGGTGTATTGGACTCACCAATT CCTTTGGGTTTGGTGGTACTAATGCAACTCTTTGTATTGCTGGCATGTAA
Translation (459 aa): MLSKCLQHFLKATISHPYPASYSWLISKHRFYGTVPAAMLRRRVVITGIGLVTPLGVGTQLVWDRLLRGE SGIVSVVGDEYKNIPCSVAAYVPRGPHEGQFNEENFVSKSDAKSMSSSTIMAVGAAELALKDSGWHPKRE ADQVATGVAIGMGMVPLEVISETALLFQTKGYNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVSTACT TGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSSNPDPKLACRPFHPERDGFVMGEGA AVLVLEEHEHAVQRGARIYAEILGYGLSGDAGHITAPDPEGEGALRCMAAAVKDAGVSPEQISYVNAHAT STPLGDAAENRAIKRLFRDHACALAISSTKGATGHLLGAAGAVEATFTALACYHQKLPPTLNLDCTEPEF DLNYVPLESQEWKAEGRCIGLTNSFGFGGTNATLCIAGM
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