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Report for CCDS26463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26463.1 Public Mus musculus 13 Txndc5 23 108 98 CCDS HistoryNCBI Gene:105245Re-query CCDS DB by CCDS ID:26463.1Re-query CCDS DB by GeneID:105245See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035988.15 ENSMUSP00000041839.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035988.15Link to Ensembl Protein Viewer:ENSMUSP00000041839.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035988Re-query CCDS DB by Protein ID:ENSMUSP00000041839
Original member Current member NCBI NM_145367.4 NP_663342.3 Accepted alive Link to Nucleotide Sequence:NM_145367.4Link to Protein Sequence:NP_663342.3Re-query CCDS DB by Nucleotide ID:NM_145367Re-query CCDS DB by Protein ID:NP_663342Link to BLAST:NP_663342.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663342.3 417 Q91W90 417 100% 0 0

Chromosomal Locations for CCDS 26463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38501586 38501708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38503431 38503560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38504724 38504806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38506949 38507089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38507894 38507980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38510127 38510242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38513068 38513164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38518983 38519088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38523329 38523478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38528188 38528408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGCCCCCGCGCCCAGGACGCCTCCTCCAGCCGCTGGCCGGGCTGCCGGCCCTGGCCACGCTCCTGCTGC
TGCTCGGGGCGCGCAAAGGCGCCCGGGCCCAGGAGGTGGAAGCGGACAGCGGGGTCGAGCAGGACCCGCA
CGCCAAGCACCTGTATACGGCCGACATGTTCACGCACGGGATCCAGAGCGCCGCGCACTTCGTCATGTTC
TTCGCGCCCTGGTGTGGACACTGCCAGCGGCTGCAGCCAACTTGGAATGACCTGGGAGACAAGTACAACA
GCATGGAGGATGCCAAGGTCTACGTGGCCAAAGTGGACTGCACGGCTGATTCCGACGTGTGCTCTGCCCA
GGGAGTGCGAGGATACCCCACCCTGAAGTTTTTTAAGCCTGGACAAGAAGCAGTGAAGTACCAGGGTCCT
AGAGACTTTGAAACACTGGAAAACTGGATGCTGCAGACACTGAACGAGGAGCCAGCCACACCGGAGCCGG
AAGCGGAACCACCCAGAGCCCCTGAGCTCAAACAGGGGTTGTATGAGCTCTCGGCCAACAACTTTGAGCT
GCATGTTTCTCAAGGCAACCACTTTATCAAGTTCTTCGCTCCGTGGTGCGGTCACTGCAAAGCTCTGGCT
CCAACCTGGGAGCAGCTGGCTCTGGGCCTTGAACATTCTGAAACCGTCAAGATTGGCAAGGTTGACTGCA
CGCAGCACTACGCTGTCTGCTCAGAGCATCAGGTCAGAGGCTATCCAACTCTGCTCTGGTTTCGAGATGG
CAAGAAGGTGGATCAGTACAAGGGAAAGCGGGACTTGGAGTCACTGAGAGACTATGTGCAGTCCCAGCTG
CAGGGTTCAGAGGCAGCTCCGGAGACTGTTGAGCCGTCAGAGGCCCCAGTGATGGCTGCTGAGCCCACGG
GTGACAAGGGCACTGTGCTGGCACTCACCGAGAAGAGCTTCGAGGACACTATTGCACAGGGGATAACCTT
CGTCAAGTTCTATGCTCCGTGGTGTGGCCACTGTAAGAATCTGGCTCCTACCTGGGAGGAGCTCTCTAAA
AAGGAATTCCCAGGCTTGTCAGATGTCACCATCGCAGAAGTGGACTGCACCGCTGAGCGCAATGTCTGCA
GCAAGTACTCGGTACGAGGTTATCCCACGTTGCTGCTTTTCCGAGGAGGTGAAAAAGTGGGAGAACACAA
CGGAGGTAGAGACCTCGACTCCTTACACAGCTTTGTTCTGCGCCAGGCAAAGGATGAACTATAG

Translation (417 aa):
MPPRPGRLLQPLAGLPALATLLLLLGARKGARAQEVEADSGVEQDPHAKHLYTADMFTHGIQSAAHFVMF
FAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTADSDVCSAQGVRGYPTLKFFKPGQEAVKYQGP
RDFETLENWMLQTLNEEPATPEPEAEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALA
PTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQL
QGSEAAPETVEPSEAPVMAAEPTGDKGTVLALTEKSFEDTIAQGITFVKFYAPWCGHCKNLAPTWEELSK
KEFPGLSDVTIAEVDCTAERNVCSKYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFVLRQAKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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