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Report for CCDS26404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26404.1 Public Mus musculus 13 Prl7a2 23 108 98 CCDS HistoryNCBI Gene:19114Re-query CCDS DB by CCDS ID:26404.1Re-query CCDS DB by GeneID:19114See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006660.6 ENSMUSP00000006660.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006660.6Link to Ensembl Protein Viewer:ENSMUSP00000006660.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000006660Re-query CCDS DB by Protein ID:ENSMUSP00000006660
Original member Current member NCBI NM_011168.4 NP_035298.1 Accepted alive Link to Nucleotide Sequence:NM_011168.4Link to Protein Sequence:NP_035298.1Re-query CCDS DB by Nucleotide ID:NM_011168Re-query CCDS DB by Protein ID:NP_035298Link to BLAST:NP_035298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035298.1 253 O54831 253 100% 0 0

Chromosomal Locations for CCDS 26404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27659057 27659281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27660865 27661044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27662672 27662779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27665056 27665094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27665878 27666056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27667964 27667994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGTCATTTTCTTTCTCTCAACCATGCCCCTCAGGGGCACTTCTGCTGGTGGTGGTGTCAAGCCTCCTTT
TATGGGAGAATGTGGCCTCTGTACCTTTGAGTAGCAATGAGACTGATGGTTATCCATTATCCATCAATGG
GCTGTTTCATAATGCCATGAGACTAACTTGGAATATCAAAAACCTCAACATGGAACTGCGCAAGACATAT
ACAGTCAATCAAGTCTCTGAAAAATTATACGAGAACTATATGCTTGACTTTATTGAGGACATGGAGTATC
TGGTCAAGGCTCTCACCTGCTGCCACAATTATTCCATCAAAACTCCAGAAAACCTGGACGAAGCTCAACA
GATTCCTTTTAACGAATTTCCAAAGCTGATCCTCAGTAGAATGTGGGCTTGGAATGAAACTTCTAAAGTT
CTACTGACCACACTCAGAAGTATTCCAGGAATGCATGATGATGTCATTTCATTAGCCAAAAACATTGAAA
CAAAACTTGCAGAGCTTTTTGAGTACACCCAGAGTATACTCAACTCGATTTATGGAACAACAACAACAGG
AAATGTGGAATACACCGTCTTTTCTGGTCTTGAAGACTTAAAATCATCTGATGAAGAATTTAGTCTTTTT
GACCTTTGTAAATTTTCCTATTGCTTACGTGTAGATATACATATGGTTGAACTTTATCTCAAGCTATTAG
AGTGTGTGGTATATGTTAGTAGTGATGTTTGTTTATCCAAAAATATTAGAGATGCTTCATGA

Translation (253 aa):
MSFSFSQPCPSGALLLVVVSSLLLWENVASVPLSSNETDGYPLSINGLFHNAMRLTWNIKNLNMELRKTY
TVNQVSEKLYENYMLDFIEDMEYLVKALTCCHNYSIKTPENLDEAQQIPFNEFPKLILSRMWAWNETSKV
LLTTLRSIPGMHDDVISLAKNIETKLAELFEYTQSILNSIYGTTTTGNVEYTVFSGLEDLKSSDEEFSLF
DLCKFSYCLRVDIHMVELYLKLLECVVYVSSDVCLSKNIRDAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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