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Report for CCDS26286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26286.1 Public Mus musculus 13 Or2b2 23 108 98 CCDS HistoryNCBI Gene:258067Re-query CCDS DB by CCDS ID:26286.1Re-query CCDS DB by GeneID:258067See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077843.5 ENSMUSP00000077010.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077843.5Link to Ensembl Protein Viewer:ENSMUSP00000077010.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000077843Re-query CCDS DB by Protein ID:ENSMUSP00000077010
Original member Current member EBI ENSMUST00000214435.1 ENSMUSP00000150106.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214435.1Link to Ensembl Protein Viewer:ENSMUSP00000150106.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214435Re-query CCDS DB by Protein ID:ENSMUSP00000150106
Original member Current member NCBI NM_001011820.2 NP_001011820.1 Accepted alive Link to Nucleotide Sequence:NM_001011820.2Link to Protein Sequence:NP_001011820.1Re-query CCDS DB by Nucleotide ID:NM_001011820Re-query CCDS DB by Protein ID:NP_001011820Link to BLAST:NP_001011820.1

Chromosomal Locations for CCDS 26286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21703003 21703944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAGTGTGGCCAATGAGAGCATCTCACGGGAGTTCATTCTCTTAGGGTTTTCAGATCGGCCATGGCTGG
AGCTGCCGCTCTTTGTGGTGTTTCTAGTGTCCTATATTCTGACCATCTTTGGAAATATGATGATCATTCT
TGTGTCCCGCCTGGATTCCAAACTCCACACCCCCATGTACTTTTTCCTCACTAACCTGTCCTTGCTGGAC
CTGTGCTACACCACAAGCACGGTCCCACAGATGCTCATCAACATCTGCAGCACCCGGAAGGTGATCAGCT
ATGGTGGCTGTGTGGCCCAGCTTTTCATTTTCCTGGCCTTGGGTTCCACAGAATGCTTTCTGCTGGGCGT
CATGTCCTTTGACAGGTTTGTAGCCATCTGTCGGCCTCTCCACTACTCAGTCATCATGCACCAGAGGCGC
TGCCTCCAGTTGGCGGCTGCATGTTGGATCAGTGGCTTCAGCAACTCAGTATTACAGTCTACGTGGACCC
TTCAGATGCCACTGTGTGGACACAAGGAAGTGGACCATTTCTTTTGCGAAGTCCCTGCCCTGCTCAAGTT
GTCCTGTGTGGATACGACAGCTAATGAAGCAGAGCTGTTCTTCATCAGTGTGCTGTTTCTTTTAATACCC
GTGACCCTCATCCTCATATCATATGCTTTTATTGTCCAGGCAGTGTTGAGAATAAGATCAGCTGAAGGTC
GGCGAAAGGCATTTGGGACATGTGGCTCCCACCTCATCGTGGTGGTCCTTTTCTATGGCACTGCCATCTA
CATGTATCTGCAGCCACCATCCCCTACTTCCAAGGACCGGGGGAAAATGGTGTCTCTCTTTTATGGGATC
ATCACACCCATGCTGAACCCCCTCATCTACACACTCAGGAACAAAGAGGTAAAGGGAGCGTTCAAGAGGT
TGGTGACAAGGATCATCCTGAGTAGAAAATAA

Translation (313 aa):
MSVANESISREFILLGFSDRPWLELPLFVVFLVSYILTIFGNMMIILVSRLDSKLHTPMYFFLTNLSLLD
LCYTTSTVPQMLINICSTRKVISYGGCVAQLFIFLALGSTECFLLGVMSFDRFVAICRPLHYSVIMHQRR
CLQLAAACWISGFSNSVLQSTWTLQMPLCGHKEVDHFFCEVPALLKLSCVDTTANEAELFFISVLFLLIP
VTLILISYAFIVQAVLRIRSAEGRRKAFGTCGSHLIVVVLFYGTAIYMYLQPPSPTSKDRGKMVSLFYGI
ITPMLNPLIYTLRNKEVKGAFKRLVTRIILSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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