NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25646.1 Public Mus musculus 11 Tmem94 23 108 98 CCDS HistoryNCBI Gene:71947Re-query CCDS DB by CCDS ID:25646.1Re-query CCDS DB by GeneID:71947See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093912.10 ENSMUSP00000091440.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093912.10Link to Ensembl Protein Viewer:ENSMUSP00000091440.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093912Re-query CCDS DB by Protein ID:ENSMUSP00000091440
Original member Current member EBI ENSMUST00000103033.7 ENSMUSP00000099322.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103033.7Link to Ensembl Protein Viewer:ENSMUSP00000099322.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103033Re-query CCDS DB by Protein ID:ENSMUSP00000099322
Original member Current member NCBI NM_028014.3 NP_082290.2 Accepted alive Link to Nucleotide Sequence:NM_028014.3Link to Protein Sequence:NP_082290.2Re-query CCDS DB by Nucleotide ID:NM_028014Re-query CCDS DB by Protein ID:NP_082290Link to BLAST:NP_082290.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082290.2 1360 Q7TSH8 1360 100% 0 0

Chromosomal Locations for CCDS 25646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115777354 115777377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115785440 115785559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115785815 115785942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115786176 115786312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115787362 115787564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115788239 115788390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115788663 115788765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115788945 115789031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115789244 115789360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115789619 115789675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115789925 115790029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115790170 115790334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115790967 115791176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115791747 115792062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115792317 115792490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115792861 115792963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115793057 115793274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115794008 115794189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115794266 115794404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115794663 115794778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115794981 115795080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115795317 115795425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115795625 115795814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115796066 115796143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115796390 115796475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115796736 115796817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115797130 115797278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115797367 115797461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115797563 115797656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115797808 115797978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115798275 115798347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4083 nt):
ATGGACCTGAGGGAGAAGCACCTGGGAGAGCCCCCCTTGGCCCTGGGCCTGTCTACCCGGAAGGCCCTCA
GTGTCCTGAAGGAGCAGCTGGAGGCTGTATTGGAGAAACACCTCAAAGAACGGAAGAAAAGTCTTACATG
GAAGGAGGCATGGAGAAGCAGCTTCCTGCACCTCAGTAACCGCTGCTCCTGTTTCCACTGGCCCGGGGCC
TCCCTGATGCTGCTGGCGGTGCTGCTGCTGTTGTGTTGCTGTGGGGGCCAGCCAGCTGGGAGCCAGGGCG
TGGAGCTGGTGAACGCCTCTGCTCTGTTCCTGTTGCTGCTCCTCAACCTCGTCCTCATCGGGCGGCAAGA
CCGGCTGAAGCGCCGGGAGGTGGAGCGCAGGCTCCGGGGGATCATCGACCAAATCCAAGATGCTCTCAGG
GATGGAAAAGAGATCAAGTGGCCGAACTCCATGTATCCAGACCTCCATATGCCCTTTGCACCTTCCTGGT
CCCTGCACTGGGCTTACAGAGATGGACACCTGGTGAACCTGCCAGTTAGCCTGTTGGTAGAAGGAGACAT
CATAGCCCTGAGGCCTGGCCAGGAGTCCTTTGCCTCCCTGAGGGGCATCAAGGACGATGAGCACATTGTC
TTGGAGCCGGGAGACCTGTTTCCCCCCTTCTCTCCACCACCATCGCCCCGGGGAGAAGTAAAGAGAGGGC
CACAGAACCCCCAGCAACACCGGCTCTTCCGAGTCCTGGAGACGCCTGTGATTGACAACATCAGATGGTG
CCTGGACACAGCCCTGTCCCGCCCCGTCACGGCTCTGGACAATGAAAGGTTCACAGTACAGTCGGTGATG
CTTCACTATGCCGTGCCGGTGGTCCTGGCTGGCTTTCTCATCACCAATGCCCTGCGCTTCATGTTCAAGG
CACCTGGGGTCACGTCCTGGCAGTACACCCTTCTCCAGCTCCAGGTGAACGGCATGTTGCCCATCCTCCC
CCTGCTCTTCCCGGTCCTCTGGGTGCTGGCGACCGCCTGTGGAGAAGCTCGTGTCCTGGCCCAGATGAGC
AAGGCTTCCCCCAGCTCCCTGCTGGCCAAGTTCTCAGAGGACACTCTCAGCAGCTACACTGAAGCCGTCT
CCTCTCAGGAGATGCTGCGCTGCATTTGGGGTCACTTTCTGAGGGTGATCCAGGGCACATCGCCAACTCT
GAGCCACAGTGCCAGTCTGCTGCACAGCTTGGGCTCCGTTACGGTACTGTGCTGTGTAGACAAACAGGGG
ATCCTATCATGGCCAAACCCCAGCCCAGAGACCGTGCTCTTCTTCAGTGGGAAGGTGGAGCCCCCTCACA
GCAGCCACGAGGACCTCACAGACGACCTGTCCACCCGTTCCTTCTGCCATCCCGAGGTGGAGGAGGAGCC
CCATGAACACGATGCCCTCCTTGCTGGCTCCCTGAACAATACCCTGCACCTTTCCAACGAGCAGGAGCGC
AGTGACTGGCTTGCCGACGGCCCCAAGCCCTCTGAGCCCTACCCTCATCATAAAGGACATGGCCGCAGCA
AACACCCGTCTGGCTCCAACGTGAGTTTCAGCAGGGACACTGAAGGCGGAGAGGAAGAGCCCAGCAAGGC
TCAGCCTGGGACAGAGGGTGATCCCTACGAGGCCGAGGACTTCGTGTGTGACTACCACTTGGAGATGCTG
AGCCTGTCCCAGGACCAACAGAACCCCTCGTGCATACAGTTCGATGATTCCAACTGGCAGTCACACCTGA
CCTCCCTCAAGCCGCTGGGCCTCAACGTGCTGCTGAACCTGTGTAACGCCAGTGTCACTGAGCGCCTGTG
CCGCTTTTCCGACCACCTGTGCAACATCGCCCTGCAGGAGAGCCACAGCGCTGTGCTGCCCGTGCACGTG
CCCTGGGGCCTCTGCGAGCTGGCCCGGCTCATAGGTTTCACTCCAGGGGCCAAGGAGCTCTTCAAGCAGG
AGAACCACCTGGCGCTCTACCGCCTCCCCAGTGCAGAGACCCTGAAGGAGACGTCATTGGGGAGGCCCTC
CTGTGTCACCAAGCGGCGCCCCCCGCTCAGCCACATGATCAGCCTCTTCATCAAAGACACTGCCACCAGC
ACAGAGCAGATGCTGTCCCATGGCAGTGCCGACGTGGTCGTGGAGGCCTGCACAGACTTCTGGGATGGCG
CTGACATCTACCCTCTGTCGGGTTCAGACAGAAAGAAAGTGCTGGACTTCTACCAGCGAGCCTGCCTATC
CGGCTATTGCTCTGCCTTTGCCTACAAGCCCATGAACTGCACGCTGTCCTCTCAGCTCAACGGCAAGTGC
ATCGAGCTGGTGCAGGTCCCCGGCCAGAACAGCATATTCACCATGTGCGAGCTGCCCAGCACCATCCCCA
TCAAGCCAAACAACCGCCGCAGCAGCTGGAGCTCCGATGAAGGGATCGGGGAGGTGCTGGAGAAAGAAGA
CTGCATGCAGGCCCTGAGCGGTCAGATCTTCATGGGCATGGTGTCCTCCCAGTACCAGGCCCGGCTGGAC
ATCGTGCGCCTCATCGATGGGCTGGTCAACGCCTGCATCCGCTTTGTGTACTTCTCTTTGGAAGATGAGC
TCAGGAGCAAGGTGTTTGCAGAGAAGATGGGCCTGGAGACAGGCTGGAACTGCCACATCTCCCTCACGCC
CAACGGTGACATGCCTGGCTCTGAGATCCCTCCCTCCAGCCCCAGCCATGCTGGCTCTCTCCATGACGAC
CTGAATCAGGTGTCCCGAGATGATGCAGAAGGGCTCCTCCTCTTAGAGGAGGAGGGTCACTCAGACCTCA
TCAGCTTCCAGCCCACCGACAGCGATATCCCCAGCTTCCTGGAAGACTGCAACCGGGCCAAGCTGCCCCG
GGGCATCCACCAGGTGCGGCCCCACCTACAGAACATCGACAATGTACCGTTGCTGGTGCCCCTCTTCACC
GACTGCACCCCTGACACCATGTGTGAGATGATAAAGATCATGCAGGAGTATGGGGAGGTGACTTGCTGCC
TGGGGAGCTCGGCCAACCTGCGCAACAGCTGCCTCTTCCTCCAGAGTGATGTCAGCATTGCCCTGGATCC
CTTATACCCATCCCGCTGCTCCTGGGAGACCTTTGGCTATGCCACCAGCACCACCATGGCCCAGGCCTCG
GATGGCCTTTCTCCCCTGCAGCTATCAGGGCAGCTCAACAGCCTGCCTTGCTCCCTGACCTTCCGACAAG
AAGAAAGCATCAGCATCATCCGGCTCATTGAGCAGGCTCGGCACGCTACCTACGGCATCCGAAAGTGCTT
CCTCTTCCTGTTGCAGTGCCAGCTGACCCTCGTGGTCATTCAGTTCCTGTCTTGTCTGGTGCAGCTGCCA
CCGCTCCTGAGTACCACAGACATTTTATGGCTATCCTGCTTTTGTTACCCTCTGCTCAGCATCTCTCTAT
TGGGAAAACCACCACATAGCTCCATCATGTCTATGGCAACGGGCAAAAACCTTCAGTCCATTCCTAAGAA
GACCCAGCACTACTTCCTGCTCTGCTTCCTGCTCAAGTTCAGCCTCACCATCAGCTCCTGCCTCGTCTGC
TTCGGCTTCACGCTGCAGAGCTTTTGTGACAGCGCCCGGGCCCGCAACCTCACCAACTGCTCCTCAGTCA
TGCTTTGCAGCAATGATGACAGAGCGCCGGCCTGGTTCGAGGATTTTGCCAATGGGTTGCTATCCGCTCA
GAAGCTCACAGCCGCCCTGATTGTTTTGCACACTGTCTTTATCTCCATCACTCATGTACACCGCACCAAG
CCTCTGTGGAGAAAGAGCCCTTTGACAAACCTCTGGTGGGCCGTGACTGTGCCTGTGGTGCTGCTCGGTC
AGGTGGTCCAGACAGTGGTGGACCTGCAGCTGTGGACACACAGGGACTCACGTGTCCACTTTGGCCTAGA
AGATGTGCCCCTGCTCACATGGCTCCTGGGCTGCCTGTCCCTGGTCCTAGTGGTAGTCACCAACGAGATT
GTAAAGTTACACGAGATTCGGGTCCGTGTCCGCTACCAGAAGCGCCAGAAGCTGCAGTTTGAGACCAAGC
TGGGCATGAACTCGCCCTTCTGA

Translation (1360 aa):
MDLREKHLGEPPLALGLSTRKALSVLKEQLEAVLEKHLKERKKSLTWKEAWRSSFLHLSNRCSCFHWPGA
SLMLLAVLLLLCCCGGQPAGSQGVELVNASALFLLLLLNLVLIGRQDRLKRREVERRLRGIIDQIQDALR
DGKEIKWPNSMYPDLHMPFAPSWSLHWAYRDGHLVNLPVSLLVEGDIIALRPGQESFASLRGIKDDEHIV
LEPGDLFPPFSPPPSPRGEVKRGPQNPQQHRLFRVLETPVIDNIRWCLDTALSRPVTALDNERFTVQSVM
LHYAVPVVLAGFLITNALRFMFKAPGVTSWQYTLLQLQVNGMLPILPLLFPVLWVLATACGEARVLAQMS
KASPSSLLAKFSEDTLSSYTEAVSSQEMLRCIWGHFLRVIQGTSPTLSHSASLLHSLGSVTVLCCVDKQG
ILSWPNPSPETVLFFSGKVEPPHSSHEDLTDDLSTRSFCHPEVEEEPHEHDALLAGSLNNTLHLSNEQER
SDWLADGPKPSEPYPHHKGHGRSKHPSGSNVSFSRDTEGGEEEPSKAQPGTEGDPYEAEDFVCDYHLEML
SLSQDQQNPSCIQFDDSNWQSHLTSLKPLGLNVLLNLCNASVTERLCRFSDHLCNIALQESHSAVLPVHV
PWGLCELARLIGFTPGAKELFKQENHLALYRLPSAETLKETSLGRPSCVTKRRPPLSHMISLFIKDTATS
TEQMLSHGSADVVVEACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMNCTLSSQLNGKC
IELVQVPGQNSIFTMCELPSTIPIKPNNRRSSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQYQARLD
IVRLIDGLVNACIRFVYFSLEDELRSKVFAEKMGLETGWNCHISLTPNGDMPGSEIPPSSPSHAGSLHDD
LNQVSRDDAEGLLLLEEEGHSDLISFQPTDSDIPSFLEDCNRAKLPRGIHQVRPHLQNIDNVPLLVPLFT
DCTPDTMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDVSIALDPLYPSRCSWETFGYATSTTMAQAS
DGLSPLQLSGQLNSLPCSLTFRQEESISIIRLIEQARHATYGIRKCFLFLLQCQLTLVVIQFLSCLVQLP
PLLSTTDILWLSCFCYPLLSISLLGKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLVC
FGFTLQSFCDSARARNLTNCSSVMLCSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISITHVHRTK
PLWRKSPLTNLWWAVTVPVVLLGQVVQTVVDLQLWTHRDSRVHFGLEDVPLLTWLLGCLSLVLVVVTNEI
VKLHEIRVRVRYQKRQKLQFETKLGMNSPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH