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Report for CCDS25252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25252.1 Public Mus musculus 11 Luc7l3 23 108 98 CCDS HistoryNCBI Gene:67684Re-query CCDS DB by CCDS ID:25252.1Re-query CCDS DB by GeneID:67684See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021226.13 ENSMUSP00000021226.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021226.13Link to Ensembl Protein Viewer:ENSMUSP00000021226.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021226Re-query CCDS DB by Protein ID:ENSMUSP00000021226
Original member Current member NCBI NM_026313.2 NP_080589.1 Accepted alive Link to Nucleotide Sequence:NM_026313.2Link to Protein Sequence:NP_080589.1Re-query CCDS DB by Nucleotide ID:NM_026313Re-query CCDS DB by Protein ID:NP_080589Link to BLAST:NP_080589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080589.1 491 Q5SUF2-2 491 100% 0 0

Chromosomal Locations for CCDS 25252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94292836 94293032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94293138 94293278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94295920 94296080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94296884 94297167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94297759 94297920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94299956 94300060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94301505 94301579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94303842 94303986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94306186 94306225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94309625 94309691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94321690 94321788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGATTTCTGCCGCGCAGTTGCTGGATGAGTTAATGGGCCGGGACCGAAACCTCGCCCCGGATGAGAAGC
GCAGCAACGTGCGCTGGGACCACGAGAGCGTTTGTAAATATTATCTCTGCGGTTTTTGTCCTGCGGAATT
GTTCACAAATACCCGTTCTGATCTTGGTCCATGTGAAAAAATTCATGATGAAAATCTAAGAAAACAGTAT
GAGAAGAGTTCTCGCTTTATGAAAGTTGGCTATGAGAGAGATTTTTTGCGATACTTACAGAGTTTACTTG
CCGAGGTAGAGCGCAGAATTAGACGAGGTCATGCTCGTTTGGCATTATCTCAAAATCAGCAGTCTTCTGG
GGCTGCTGGTCCAACAGGCAAAAATGAAGAAAAAATTCAGGTTCTGACAGACAAAATTGATGTGCTTCTA
CAGCAGATTGAAGAGTTAGGATCTGAAGGAAAGGTAGAAGAAGCCCAGGGAATGATGAAATTGGTTGAAC
AGTTAAAGGAAGAGAGAGAATTACTAAGATCTACAACCTCGACTATAGAAAGTTTTGCTGCCCAAGAAAA
ACAGATGGAAGTTTGTGAAGTGTGTGGAGCCTTTTTGATAGTAGGAGACGCCCAGTCCCGAGTAGATGAC
CATCTGATGGGAAAGCAACACATGGGCTATGCCAAAATTAAAGCCACTGTGGAAGAATTAAAAGAAAAGT
TAAGAAAAAGAACAGAGGAACCTGATCGGGATGAACGTCTCAAAAAAGAGAAGCAAGAAAGAGAGGAAAG
AGAAAAAGAGCGGGAGAGAGAAAGAGAAGAACGGGAAAGAAAAAGACGAAGAGAAGAGGAAGAAAGGGAA
AAAGAAAGAGCTCGTGACAGAGAAAGGAGAAAGAGAAGTCGTTCACGGAGTAGACACTCAAGCCGAACTT
CTGACCGGAGATGCAGCAGGTCTCGGGACCACAAAAGATCACGGAGTAGAGACAGAAGGCGAAGCAGAAG
TAGAGATCGACGAAGAAGCAGAAGCCATGACAGATCAGAAAGAAAACATAGATCTCGCAGTCGGGATCGA
AGACGGTCAAAAAGCCGAGATCGAAAGTCATATAAGCACAGGAGCAAAAGTCGGGACAGAGAACAAGATA
GAAAGTCCAAGGAGAAAGAAAAGAAGGGATCTGATGATAAAAAGAGTAGTGTGAAGTCCAGTAGTCGAGA
AAAGCAGAGTGAAGACACAAACCCTGAATCGAAGGAAAGTGACACTAAGAATGAGGTCAATGGGACCAGT
GAAGACATTAAATCTGAAGTGCAGCGTAAGTATGCACAGATGAAGATGGAGCTAAGCCGAGTAAGAAGAC
ATACAAAAGCCTCTTCTGAAGGAAAAGACAGTGTAGTCCTGCAAAACATTTTGAGGTACATTGTTTTGTC
TCAGCTATTTTGTAGCAGACTTCGTGCCCCCATTAGTGTGCCTCTTTGGAAATTACTGTCCACGTATGTA
ATATAG

Translation (491 aa):
MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQY
EKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLL
QQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDD
HLMGKQHMGYAKIKATVEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEERE
KERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRDRRRSRSRDRRRSRSHDRSERKHRSRSRDR
RRSKSRDRKSYKHRSKSRDREQDRKSKEKEKKGSDDKKSSVKSSSREKQSEDTNPESKESDTKNEVNGTS
EDIKSEVQRKYAQMKMELSRVRRHTKASSEGKDSVVLQNILRYIVLSQLFCSRLRAPISVPLWKLLSTYV
I


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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