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Report for CCDS25148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25148.1 Public Mus musculus 11 Rffl 23 108 98 CCDS HistoryNCBI Gene:67338Re-query CCDS DB by CCDS ID:25148.1Re-query CCDS DB by GeneID:67338See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074515.10 ENSMUSP00000074108.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074515.10Link to Ensembl Protein Viewer:ENSMUSP00000074108.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074515Re-query CCDS DB by Protein ID:ENSMUSP00000074108
Original member Current member EBI ENSMUST00000108173.9 ENSMUSP00000103808.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108173.9Link to Ensembl Protein Viewer:ENSMUSP00000103808.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108173Re-query CCDS DB by Protein ID:ENSMUSP00000103808
Original member Current member NCBI NM_001007465.3 NP_001007466.1 Accepted alive Link to Nucleotide Sequence:NM_001007465.3Link to Protein Sequence:NP_001007466.1Re-query CCDS DB by Nucleotide ID:NM_001007465Re-query CCDS DB by Protein ID:NP_001007466Link to BLAST:NP_001007466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007466.1 363 Q6ZQM0-2 363 100% 0 0

Chromosomal Locations for CCDS 25148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 82806008 82806189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82808513 82808536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82810008 82810218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82811028 82811111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82812400 82812810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82818416 82818595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGTGGGCATCCTGCTGCAACTGGTTCTGCTTGGATGGACAGCCTGAGGAGGCACCACCACCACAGGGAG
CCAGGACACAAGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCCCCCACAGGCTCGGAACCTAGCTG
CAAGGCCTGCGGGGTCCATTTCGCAAGCACAACCCGGAAGCAGACCTGCTTGGACTGTAAGAAAAACTTC
TGCATGACTTGTTCGAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGGTTCCGAGCCA
CGGCCTTCCAGCGGGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCACGA
CATCTCTACGGAAATGTGCCGGGAGAAAGAGGAGCTGGTGTTCCTGGTGCTTGGCCAGCAGCCTGTAATT
TCTGAGGCGGACAGGACTCGTGTTCCCCACTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCCTGACCC
AGCCTCAAACCAGCACAGTGCCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGT
CCCCTTAGCCCAGGATCAGGAAACTCAGCAGGCCGTTGGCCATGTGTCTCAGGACCACGAGGAGCCCATC
TTCCCGGAGAGCACAGCCAGAGTACCTACTGAGGATGAGACCCAGTCCGTTGACTCAGAGGACAGCTTCG
TCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTACGGCA
GCTGAAGGAGATCCTGGCTCGTAACTTTGTCAACTATAAGGGCTGCTGCGAGAAGTGGGAGCTGATGGAG
AGGGTGACTCGGCTGTACAAGGATCAGAAAGGACTCCAGCACCTGGTGTCTGGTAATGAAGACCAAAACG
GGGGAGCAGTGCCTTCTGGCCTGGAGGAGAACCTGTGTAAGATTTGCATGGACTCACCCATTGACTGTGT
TCTGCTGGAGTGTGGCCACATGGTGACCTGTACCAAGTGTGGCAAACGCATGAACGAATGTCCTATCTGC
CGGCAGTATGTGATCAGAGCAGTGCACGTCTTCCGGTCCTGA

Translation (363 aa):
MWASCCNWFCLDGQPEEAPPPQGARTQAYSNPGYSSFPSPTGSEPSCKACGVHFASTTRKQTCLDCKKNF
CMTCSSQEGNGPRLCLLCLRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEELVFLVLGQQPVI
SEADRTRVPHLPQAFPEQQAFLTQPQTSTVPPTSPGLPSSPAQVTSVPLAQDQETQQAVGHVSQDHEEPI
FPESTARVPTEDETQSVDSEDSFVPGRRASLSDLTHLEDIEGLTVRQLKEILARNFVNYKGCCEKWELME
RVTRLYKDQKGLQHLVSGNEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPIC
RQYVIRAVHVFRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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