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Report for CCDS24671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24671.1 Public Mus musculus 11 Vdac1 23 108 98 CCDS HistoryNCBI Gene:22333Re-query CCDS DB by CCDS ID:24671.1Re-query CCDS DB by GeneID:22333See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102758.7 ENSMUSP00000099819.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102758.7Link to Ensembl Protein Viewer:ENSMUSP00000099819.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102758Re-query CCDS DB by Protein ID:ENSMUSP00000099819
Original member NCBI NM_011694.6 NP_035824.1 Updated not alive Link to Nucleotide Sequence:NM_011694.6Link to Protein Sequence:NP_035824.1Re-query CCDS DB by Nucleotide ID:NM_011694Re-query CCDS DB by Protein ID:NP_035824
Current member NCBI NM_011694.7 NP_035824.1 Accepted alive Link to Nucleotide Sequence:NM_011694.7Link to Protein Sequence:NP_035824.1Re-query CCDS DB by Nucleotide ID:NM_011694Re-query CCDS DB by Protein ID:NP_035824Link to BLAST:NP_035824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035824.1 283 Q60932-2 283 100% 0 0

Chromosomal Locations for CCDS 24671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 52374302 52374368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52374918 52374967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52376391 52376543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52376648 52376700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52383850 52384077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52385583 52385733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52387416 52387473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52388432 52388523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCCGTGCCTCCCACATACGCCGATCTTGGCAAGTCCGCCAGGGATGTCTTCACCAAGGGCTACGGCT
TTGGCTTAATAAAACTTGATTTGAAAACGAAGTCAGAGAATGGATTGGAATTTACCAGCTCAGGCTCTGC
CAACACGGAAACCACCAAAGTGAACGGCAGCCTGGAAACCAAGTACAGATGGACTGAGTATGGGCTGACG
TTTACAGAGAAGTGGAACACAGACAACACCCTGGGCACTGAGATCACTGTGGAAGACCAGCTTGCTCGTG
GACTGAAGCTCACCTTTGATTCGTCATTCTCGCCGAACACTGGGAAAAAAAATGCTAAAATCAAGACAGG
GTACAAGAGGGAGCACATCAACCTCGGCTGTGACGTGGACTTTGACATCGCTGGGCCCTCGATCCGGGGC
GCTCTGGTGCTTGGCTATGAGGGTTGGCTGGCTGGCTACCAGATGAATTTTGAGACCTCGAAGTCCCGAG
TGACCCAGAGCAACTTCGCAGTTGGCTATAAGACGGATGAATTCCAGCTTCATACTAATGTGAATGACGG
GACAGAGTTTGGTGGCTCCATTTACCAGAAGGTGAACAAGAAGTTGGAGACTGCTGTCAATCTCGCCTGG
ACTGCAGGAAACAGTAACACTCGCTTCGGAATAGCAGCCAAGTATCAGGTCGACCCTGATGCCTGCTTTT
CGGCCAAAGTGAACAACTCTAGCCTGATTGGCTTAGGGTACACTCAGACCCTAAAACCAGGTATCAAACT
GACGTTGTCAGCCCTGCTCGATGGCAAGAACGTCAATGCGGGTGGCCACAAGCTTGGCCTAGGACTGGAA
TTTCAAGCATAA

Translation (283 aa):
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLT
FTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRG
ALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAW
TAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE
FQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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