NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24163.1 Public Mus musculus 10 Syt1 23 108 98 CCDS HistoryNCBI Gene:20979Re-query CCDS DB by CCDS ID:24163.1Re-query CCDS DB by GeneID:20979See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064054.13 ENSMUSP00000063293.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064054.13Link to Ensembl Protein Viewer:ENSMUSP00000063293.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064054Re-query CCDS DB by Protein ID:ENSMUSP00000063293
Original member Current member EBI ENSMUST00000105276.7 ENSMUSP00000100912.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105276.7Link to Ensembl Protein Viewer:ENSMUSP00000100912.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105276Re-query CCDS DB by Protein ID:ENSMUSP00000100912
Original member Current member NCBI NM_001252341.1 NP_001239270.1 Accepted alive Link to Nucleotide Sequence:NM_001252341.1Link to Protein Sequence:NP_001239270.1Re-query CCDS DB by Nucleotide ID:NM_001252341Re-query CCDS DB by Protein ID:NP_001239270Link to BLAST:NP_001239270.1
Original member Current member NCBI NM_001358502.1 NP_001345431.1 Accepted alive Link to Nucleotide Sequence:NM_001358502.1Link to Protein Sequence:NP_001345431.1Re-query CCDS DB by Nucleotide ID:NM_001358502Re-query CCDS DB by Protein ID:NP_001345431Link to BLAST:NP_001345431.1
Original member Current member NCBI NM_001358503.1 NP_001345432.1 Accepted alive Link to Nucleotide Sequence:NM_001358503.1Link to Protein Sequence:NP_001345432.1Re-query CCDS DB by Nucleotide ID:NM_001358503Re-query CCDS DB by Protein ID:NP_001345432Link to BLAST:NP_001345432.1
Original member Current member NCBI NM_009306.3 NP_033332.1 Accepted alive Link to Nucleotide Sequence:NM_009306.3Link to Protein Sequence:NP_033332.1Re-query CCDS DB by Nucleotide ID:NM_009306Re-query CCDS DB by Protein ID:NP_033332Link to BLAST:NP_033332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239270.1 421 P46096 421 100% 0 0
NP_001345431.1 421 P46096 421 100% 0 0
NP_001345432.1 421 P46096 421 100% 0 0
NP_033332.1 421 P46096 421 100% 0 0

Chromosomal Locations for CCDS 24163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 108500540 108500746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108504397 108504530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108583874 108583991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108627253 108627420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108631796 108631963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108636551 108636673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108642214 108642398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108690884 108691046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGTGAGTGCCAGTCGTCCTGAGGCCCTGGCTGCCCCTGTCACCACTGTTGCGACCCTTGTCCCACACA
ACGCCACTGAGCCAGCCAGTCCTGGGGAAGGGAAGGAAGATGCCTTTTCCAAGCTGAAGCAGAAGTTTAT
GAATGAACTGCATAAAATCCCATTGCCACCGTGGGCCTTAATTGCCATAGCCATAGTTGCGGTCCTTCTA
GTCGTGACCTGCTGCTTCTGTGTCTGTAAGAAATGTTTGTTCAAAAAGAAAAACAAGAAGAAGGGAAAGG
AAAAGGGAGGGAAGAACGCCATTAACATGAAAGACGTGAAAGACTTAGGGAAGACCATGAAGGATCAGGC
CCTTAAGGATGACGATGCTGAAACTGGACTGACTGATGGAGAAGAAAAGGAGGAGCCCAAGGAAGAGGAG
AAACTGGGAAAGCTTCAATATTCACTGGACTATGACTTCCAGAATAACCAGCTGCTGGTGGGAATCATCC
AGGCTGCTGAACTGCCCGCCCTGGACATGGGAGGCACATCTGATCCATACGTCAAAGTCTTCCTGCTGCC
CGACAAAAAGAAGAAGTTTGAGACAAAAGTCCACCGGAAAACCCTCAATCCAGTCTTCAATGAACAGTTT
ACTTTCAAGGTGCCATACTCGGAATTAGGTGGCAAGACACTGGTGATGGCTGTGTATGATTTTGACCGCT
TCTCCAAGCACGACATCATTGGAGAGTTCAAAGTTCCTATGAACACCGTGGATTTTGGCCACGTCACCGA
GGAGTGGCGCGATCTCCAGAGTGCTGAGAAAGAAGAGCAAGAGAAACTGGGTGACATCTGCTTCTCCCTC
CGCTACGTCCCTACTGCCGGCAAGCTGACTGTTGTCATTCTGGAAGCCAAGAACCTGAAGAAGATGGATG
TGGGTGGCTTATCTGATCCCTATGTAAAGATTCACCTGATGCAGAACGGCAAGAGACTGAAGAAGAAAAA
GACAACGATTAAGAAGAACACACTTAACCCCTACTACAATGAGTCCTTCAGCTTTGAAGTTCCGTTCGAG
CAAATCCAGAAAGTGCAAGTGGTGGTAACTGTTTTGGACTATGACAAGATTGGCAAGAACGACGCCATCG
GCAAAGTCTTTGTGGGCTACAACAGCACCGGCGCAGAGCTGCGACACTGGTCAGACATGCTGGCCAACCC
CCGGCGACCCATCGCCCAGTGGCACACTCTGCAGGTAGAGGAGGAGGTTGATGCCATGCTGGCTGTCAAG
AAGTAA

Translation (421 aa):
MVSASRPEALAAPVTTVATLVPHNATEPASPGEGKEDAFSKLKQKFMNELHKIPLPPWALIAIAIVAVLL
VVTCCFCVCKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQALKDDDAETGLTDGEEKEEPKEEE
KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF
TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSL
RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE
QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVK
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH