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Report for CCDS24121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24121.1 Public Mus musculus 10 Slc25a3 23 108 98 CCDS HistoryNCBI Gene:18674Re-query CCDS DB by CCDS ID:24121.1Re-query CCDS DB by GeneID:18674See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076694.12 ENSMUSP00000075987.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076694.12Link to Ensembl Protein Viewer:ENSMUSP00000075987.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076694Re-query CCDS DB by Protein ID:ENSMUSP00000075987
Original member Current member EBI ENSMUST00000164505.1 ENSMUSP00000132480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164505.1Link to Ensembl Protein Viewer:ENSMUSP00000132480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164505Re-query CCDS DB by Protein ID:ENSMUSP00000132480
Original member NCBI NM_133668.4 NP_598429.1 Updated not alive Link to Nucleotide Sequence:NM_133668.4Link to Protein Sequence:NP_598429.1Re-query CCDS DB by Nucleotide ID:NM_133668Re-query CCDS DB by Protein ID:NP_598429
Current member NCBI NM_133668.5 NP_598429.1 Accepted alive Link to Nucleotide Sequence:NM_133668.5Link to Protein Sequence:NP_598429.1Re-query CCDS DB by Nucleotide ID:NM_133668Re-query CCDS DB by Protein ID:NP_598429Link to BLAST:NP_598429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598429.1 357 Q8VEM8 357 100% 0 0

Chromosomal Locations for CCDS 24121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 91116964 91117124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91117213 91117323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91118044 91118216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91118699 91118880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91119527 91119706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91121922 91122043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91123558 91123702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGTTCTCGTCCGTAGCGCACCTGGCGCGGGCGAACCCCTTCAACGCGCCACACCTGCAGCTGGTGCACG
ATGGCCTGTCGGGTCCCCGCAGTCCCCCAGCTCCGCCCCGGCGTTCCCGCCACCTGGCCGCCGCCGCCGT
GGAAGAGTACAGTTGTGAATTTGGCTCCATGAAGTATTATGCACTGTGTGGCTTTGGTGGGGTCTTAAGT
TGTGGGCTGACACACACTGCTGTTGTTCCCCTGGACTTAGTAAAGTGCCGCATGCAGGTGGACCCTCAGA
AGTACAAAGGCATATTTAATGGATTCTCCATTACACTGAAAGAAGATGGCGTTCGTGGTTTGGCTAAAGG
ATGGGCCCCAACTTTGATTGGCTATTCCATGCAAGGGCTCTGCAAATTCGGCTTTTATGAAGTCTTCAAA
GCCTTATATAGCAACATACTTGGTGAGGAAAACACCTACCTGTGGCGCACATCACTGTATTTAGCTTCTT
CTGCCAGTGCTGAATTCTTCGCTGACATTGCCCTGGCTCCTATGGAAGCTGCTAAAGTTCGAATTCAAAC
CCAGCCTGGTTATGCCAACACCTTGAGGGAAGCTGTTCCCAAAATGTATAAAGAGGAAGGCTTAAATGCG
TTCTACAAGGGCGTTGCTCCTCTGTGGATGAGACAGATCCCGTACACCATGATGAAGTTCGCCTGCTTTG
AACGTACTGTTGAAGCTTTGTACAAATTTGTGGTTCCTAAGCCCCGAAGTGAATGTACAAAGGCAGAGCA
GCTGGTTGTGACATTTGTGGCAGGTTACATAGCTGGAGTCTTCTGTGCGATCGTCTCCCACCCTGCTGAC
TCTGTGGTCTCTGTGCTGAATAAAGAGAAAGGCAGCACCGCGTCTCAGGTCCTGCAGAGGCTGGGCTTCA
GAGGTGTGTGGAAGGGGCTCTTCGCCCGAATCATCATGATTGGCACTCTGACTGCACTACAGTGGTTCAT
CTACGACTCTGTGAAGGTCTACTTCAGGCTCCCTCGCCCTCCTCCCCCTGAGATGCCAGAGTCTCTGAAG
AAGAAGCTTGGGTTAACTGAGTAG

Translation (357 aa):
MFSSVAHLARANPFNAPHLQLVHDGLSGPRSPPAPPRRSRHLAAAAVEEYSCEFGSMKYYALCGFGGVLS
CGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGFYEVFK
ALYSNILGEENTYLWRTSLYLASSASAEFFADIALAPMEAAKVRIQTQPGYANTLREAVPKMYKEEGLNA
FYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECTKAEQLVVTFVAGYIAGVFCAIVSHPAD
SVVSVLNKEKGSTASQVLQRLGFRGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLK
KKLGLTE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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