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Report for CCDS23864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23864.1 Public Mus musculus 10 Pla2g12b 23 108 98 CCDS HistoryNCBI Gene:69836Re-query CCDS DB by CCDS ID:23864.1Re-query CCDS DB by GeneID:69836See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23864.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009790.13 ENSMUSP00000009790.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009790.13Link to Ensembl Protein Viewer:ENSMUSP00000009790.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000009790Re-query CCDS DB by Protein ID:ENSMUSP00000009790
Original member Current member NCBI NM_023530.2 NP_076019.2 Accepted alive Link to Nucleotide Sequence:NM_023530.2Link to Protein Sequence:NP_076019.2Re-query CCDS DB by Nucleotide ID:NM_023530Re-query CCDS DB by Protein ID:NP_076019Link to BLAST:NP_076019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076019.2 195 Q99P27 195 99.4872% 0 1

Chromosomal Locations for CCDS 23864.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59403771 59403981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59410977 59411065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59416348 59416513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59421463 59421584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGAAGCTGCTCTGCGGCTTCTTCCTCCTGTGGCTTGGCCTGGTAGGGAACCTGGCTCAGAGTGACCCCA
GCCCCAAGGAAGAGGAGTCCTACTCTGACTGGGGCCTGAGGCAGCTGCGGGGCAGCTTCGAGTCTGTCAA
CAGCTACGTGGATTCCTTCATGGAGCTGCTGGGAGGGAAGAATGGAGTCTGTCAGTACCGGTGTCGATAT
GGAAAGGCGCCGATGCCCAGACCTGGTTACAAAGCCCAGGAGCCCAATGGTTGCAGTTCCTATTTCCTGG
GTATCAAGGTACCAGGAAGTATGGACCTGGGCATCCCAGCAATGACCAAGTGTTGCAACCAGCTGGACGT
CTGCTACGACACCTGCGGTGCCAACAAATACCGCTGTGACGCAAAATTCCGATGGTGCCTCCACTCAATC
TGCTCCGACCTCAAGCGGAGCCTGGGCTTTGTCTCCAACGTGGAAGCAGCCTGTGATTCTCTGGCTGATA
CCGTGTTCAACACCGTGTGGACCTTGGGCTGCCGACCCTTTATGAACAGTCAGCGGGCAGCCTGCATCTG
TGCAGAGGAGGAGAAAGAAGAGCTATGA

Translation (195 aa):
MKLLCGFFLLWLGLVGNLAQSDPSPKEEESYSDWGLRQLRGSFESVNSYVDSFMELLGGKNGVCQYRCRY
GKAPMPRPGYKAQEPNGCSSYFLGIKVPGSMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSI
CSDLKRSLGFVSNVEAACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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