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Report for CCDS23280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23280.1 Public Mus musculus 9 Dis3l 23 108 98 CCDS HistoryNCBI Gene:213550Re-query CCDS DB by CCDS ID:23280.1Re-query CCDS DB by GeneID:213550See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068367.13 ENSMUSP00000063830.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068367.13Link to Ensembl Protein Viewer:ENSMUSP00000063830.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068367Re-query CCDS DB by Protein ID:ENSMUSP00000063830
Original member Current member EBI ENSMUST00000113890.1 ENSMUSP00000109522.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113890.1Link to Ensembl Protein Viewer:ENSMUSP00000109522.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113890Re-query CCDS DB by Protein ID:ENSMUSP00000109522
Original member Current member EBI ENSMUST00000120760.7 ENSMUSP00000113503.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120760.7Link to Ensembl Protein Viewer:ENSMUSP00000113503.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120760Re-query CCDS DB by Protein ID:ENSMUSP00000113503
Original member Current member NCBI NM_001177784.1 NP_001171255.1 Accepted alive Link to Nucleotide Sequence:NM_001177784.1Link to Protein Sequence:NP_001171255.1Re-query CCDS DB by Nucleotide ID:NM_001177784Re-query CCDS DB by Protein ID:NP_001171255Link to BLAST:NP_001171255.1
Original member Current member NCBI NM_172519.3 NP_766107.1 Accepted alive Link to Nucleotide Sequence:NM_172519.3Link to Protein Sequence:NP_766107.1Re-query CCDS DB by Nucleotide ID:NM_172519Re-query CCDS DB by Protein ID:NP_766107Link to BLAST:NP_766107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171255.1 970 Q8C0S1-2 970 100% 0 0
NP_766107.1 970 Q8C0S1-2 970 100% 0 0

Chromosomal Locations for CCDS 23280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64307043 64307348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64307430 64307604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64308280 64308425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64310167 64310345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64310442 64310596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64311446 64311979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64313934 64314026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64314553 64314800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64317688 64317849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64319083 64319252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64322402 64322581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64324622 64324700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64325708 64325884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64329433 64329568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64330787 64330915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64339479 64339522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2913 nt):
ATGCAAACGGCCTGTCAAGCTGTGCAGCACCAGAGAGGCCGGAGACAGTATAACAAACTGCGAAACCTCC
TGAAGGATGCTCGCCATGACTGCGTTCTCTTTGCTAACGAGTTCCAGCAGCACTGTTACCTCCCCCGGGA
AAAGGGGGAAGCCATGGAGAAGTGGCAGACCAGGAGCATATACAACTCAGCGGTTTGGTACTATCACCAC
TGTGAGGACAGGATGCCCATCGTTATGGTGACAGAAGATGAAGAGGCCATTCAGAAGTATGGAAGTGAAA
CAGAAGGCGTATTTGTCATTTCTTTCAAGAATTACCTGGACAACTTCTGGCCAGATTTGAAGGCTGCCCA
CGATCTCTGTGACTCCATCCTTCAGTCTCGCCGGGAAAGGGAGACTGAGAGTCAGGAAACCCATGGGAAA
GAGTACCCAGAACATCTTCCCCTAGAAGTACTGGAAGCGGGCATCAAATCTGGACGCTACATCCAGGGAA
TTCTGAATGTCAACAAGCACAGAGCTCAGATTGAAGCTTTCGTTCGCCTACACGGAGCCAGCAGTAAGGA
CTCAGGCTTGGTCAGCGACATCCTCATCCATGGCTCGAAGGCTCGGAACCGCTCCATCCATGGAGACGTC
GTGGTGGTGGAGATGCTCCCCAAAAGTGAGTGGAAAGGGAGAACAGCCGCCCTGGGTGAGAACGACAGTG
ATGACAAGGCCTCGGGCGAGTCCCCGAGTGAGCCCATGCCCACAGGTCGAGTGGTAGGCATCCTTCAGAA
GAACTGGCGAGATTATGTGGTGACATTTCCATCCAAAGAAGAGGTCCAGTCTCAGGGCAAAAATGCTCAG
AAGATCCTGGTTACGCCGTGGGATTACAGAATCCCTAAGATCCGCATCAGCACCCAGCAAGCAGAAGCCC
TCCAGGATTTCAGGGTGGTTGTGCGCATTGACTCCTGGGAGGCAACATCAGTGTATCCAAATGGACATTT
TGTGCGTGTCTTAGGGAGAATCGGTGATCTGGAAGGGGAGATTGCAACCATCCTGGTAGAGAACAGTATC
TCTGTGGTCCCCTTCTCAGAAGCCCAGATGTGTGAGATGCCAGTGAACACACCAGAAAACCCTTGGAAAG
TGAGTCCCAAAGAAGAGCAAGAGCGGAAGGACCTGAGGACCACCCACCTCGTGTTCAGCATCGACCCCAA
AGGTTGTGAAGATGTGGATGACACACTCTCAGTCAGAACCTTGAATAACGGCAACCTGGAGCTGGGGGTC
CACATCGCTGACGTCACACACTTTGTGGCCCCTAACTCTTACATCGATGTTGAAGCTAGAACGAGGGCCA
CCACTTACTACCTAGCGGACCGTCGCTATGACATGCTGCCTTCCATCCTCAGCGCAGACCTCTGCTCCCT
CCTGGGAGGCGTTGACCGGTATGCTGTGTCAGTCATGTGGGAATTAGATAAAACCTCTTATGAAATTAAG
AAGGTGTGGTACGGCAGAACCATTATCCGATCAGCTTACAAACTGTTCTACGAGGCGGCCCAGGAACTAC
TGGACGGAAACTTCAGCATTGTTGATGATATTCCAGAACTTAAAGCCTTGGACAAGCAGAGCCAACAGGC
CAAACTAGAGGAGTTAGTGTGGGCAATTGGAAAGTTGACAGACATAGCTCGCCACATCCGAGCAAAGAGA
GACCGCTGTGGAGCCTTGGAGCTGGAAGGGGTAGAGGTTCGAGTCCAGCTGGATGACAAGAAGAACATCC
GTGACCTCATCCCCAAGCAGCCCCTGGAGGTTCACGAGACGGTGGCTGAGTGCATGATCCTAGCCAACCA
CTGGGTGGCCAAGAAGATCTGGGAGAGCTTCCCCCACCAGGCTCTGCTGCGCCAGCACCCTCCACCACAC
CAGGAGTTTTTCTCAGAGCTCCGGGAATGTGCTAAAGCAAAAGGCTTCTTCATAGACACACGGTCCAATA
AAACCCTGGCTGACTCTCTGGATAGTGCAAATGACCCCAAGGACCCCCTGGTAAACAAGCTGCTGCGCTC
CATGGCCACCCAGGCCATGTCCAACGCGCTCTACTTCTCTACGGGATCCTGCGCAGAGGAGGAGTTCCAT
CATTACGGGCTGGCCTTAGATAAATACACCCACTTTACCTCTCCAATAAGAAGATACTCAGATATTGTAG
TACATCGGCTATTAATGGCAGCCATTTCAAAAGACAAGAAAATGGAGATTAAAGAAAATTTGTTCAGCAA
CAAAAATCTTGAGGAATTATGCAGACACATTAACAACAGAAACCGAGCGGCACAGCGGTCTCAGAAGCAG
TCCACCGAGCTCTTCCAGTGCATGTACTTTAAAGACCGAGATGCAGAAACTGAGGAGCGCTGCATAGCTG
ATGGAGTTATTTATTCCATTAGAACAAATGGTGTACTTGTATTTATACCAAGGTTTGGGATTAAAGGTGC
TGCTTATCTGAAGAATAAAGATAGCTTAGTGATCTCCTGTGGCCCAGAGGGCAGCTCTGAATGGAAGCCA
GGATCCCTACAAAGATCTCAAAACAAGATCATCTCTACCACAGCTGGAGGGCAGTCTGTTACATTTCATC
TATTTGACCATGTGACGGTAAGAATTTCTGTCCAGGCCTCGCGCTGCCACTCTGATACAATCAGGCTTGA
AATAGTAAGCAACAAGCCATACATGATCCCAAACACAGAACTCTGTCACCAGAGCTCCCTGCTGAAGAGT
GAGTTAGTGAAGGAAGTAACCCGATCTGTGGAGGAAGCGCAGCTTGCACAAGAAGTCAAAGGCAAGGTGA
TTCAGGAAGAGCATCAAGAATACTGCCAGACAAAGGGAAGAAGTCTGTACACACTTCTGGAGGAGATAAG
GGACCTAGCTCTTCTGGATGTCTCTGACAGTTGTGCAATGTGA

Translation (970 aa):
MQTACQAVQHQRGRRQYNKLRNLLKDARHDCVLFANEFQQHCYLPREKGEAMEKWQTRSIYNSAVWYYHH
CEDRMPIVMVTEDEEAIQKYGSETEGVFVISFKNYLDNFWPDLKAAHDLCDSILQSRRERETESQETHGK
EYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLHGASSKDSGLVSDILIHGSKARNRSIHGDV
VVVEMLPKSEWKGRTAALGENDSDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQ
KILVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWEATSVYPNGHFVRVLGRIGDLEGEIATILVENSI
SVVPFSEAQMCEMPVNTPENPWKVSPKEEQERKDLRTTHLVFSIDPKGCEDVDDTLSVRTLNNGNLELGV
HIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVMWELDKTSYEIK
KVWYGRTIIRSAYKLFYEAAQELLDGNFSIVDDIPELKALDKQSQQAKLEELVWAIGKLTDIARHIRAKR
DRCGALELEGVEVRVQLDDKKNIRDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPH
QEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPKDPLVNKLLRSMATQAMSNALYFSTGSCAEEEFH
HYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKENLFSNKNLEELCRHINNRNRAAQRSQKQ
STELFQCMYFKDRDAETEERCIADGVIYSIRTNGVLVFIPRFGIKGAAYLKNKDSLVISCGPEGSSEWKP
GSLQRSQNKIISTTAGGQSVTFHLFDHVTVRISVQASRCHSDTIRLEIVSNKPYMIPNTELCHQSSLLKS
ELVKEVTRSVEEAQLAQEVKGKVIQEEHQEYCQTKGRSLYTLLEEIRDLALLDVSDSCAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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