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Report for CCDS226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
226.1 Public Homo sapiens 1 C1QA 24 110 108 CCDS HistoryNCBI Gene:712Re-query CCDS DB by CCDS ID:226.1Re-query CCDS DB by GeneID:712See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 226.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374642.8 ENSP00000363773.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374642.8Link to Ensembl Protein Viewer:ENSP00000363773.3Re-query CCDS DB by Nucleotide ID:ENST00000374642Re-query CCDS DB by Protein ID:ENSP00000363773
Original member Current member EBI ENST00000402322.2 ENSP00000385564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402322.2Link to Ensembl Protein Viewer:ENSP00000385564.1Re-query CCDS DB by Nucleotide ID:ENST00000402322Re-query CCDS DB by Protein ID:ENSP00000385564
Original member Current member EBI ENST00000438241.2 ENSP00000416841.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438241.2Link to Ensembl Protein Viewer:ENSP00000416841.2Re-query CCDS DB by Nucleotide ID:ENST00000438241Re-query CCDS DB by Protein ID:ENSP00000416841
Original member Current member EBI ENST00000695740.1 ENSP00000512133.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695740.1Link to Ensembl Protein Viewer:ENSP00000512133.1Re-query CCDS DB by Nucleotide ID:ENST00000695740Re-query CCDS DB by Protein ID:ENSP00000512133
Original member Current member EBI ENST00000695744.1 ENSP00000512137.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695744.1Link to Ensembl Protein Viewer:ENSP00000512137.1Re-query CCDS DB by Nucleotide ID:ENST00000695744Re-query CCDS DB by Protein ID:ENSP00000512137
Original member Current member NCBI NM_001347465.2 NP_001334394.1 Accepted alive Link to Nucleotide Sequence:NM_001347465.2Link to Protein Sequence:NP_001334394.1Re-query CCDS DB by Nucleotide ID:NM_001347465Re-query CCDS DB by Protein ID:NP_001334394Link to BLAST:NP_001334394.1
Original member Current member NCBI NM_001347466.2 NP_001334395.1 Accepted alive Link to Nucleotide Sequence:NM_001347466.2Link to Protein Sequence:NP_001334395.1Re-query CCDS DB by Nucleotide ID:NM_001347466Re-query CCDS DB by Protein ID:NP_001334395Link to BLAST:NP_001334395.1
Original member Current member NCBI NM_015991.4 NP_057075.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015991.4Link to Protein Sequence:NP_057075.1Re-query CCDS DB by Nucleotide ID:NM_015991Re-query CCDS DB by Protein ID:NP_057075Link to BLAST:NP_057075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334394.1 245 P02745 245 100% 0 0
NP_001334395.1 245 P02745 245 100% 0 0
NP_057075.1 245 P02745 245 100% 0 0

Chromosomal Locations for CCDS 226.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 22637617 22637779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22638833 22639407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGAGGGTCCCCGGGGATGGCTGGTGCTCTGTGTGCTGGCCATATCGCTGGCCTCTATGGTGACCGAGG
ACTTGTGCCGAGCACCAGACGGGAAGAAAGGGGAGGCAGGAAGACCTGGCAGACGGGGGCGGCCAGGCCT
CAAGGGGGAGCAAGGGGAGCCGGGGGCCCCTGGCATCCGGACAGGCATCCAAGGCCTTAAAGGAGACCAG
GGGGAACCTGGGCCCTCTGGAAACCCCGGCAAGGTGGGCTACCCAGGGCCCAGCGGCCCCCTCGGAGCCC
GTGGCATCCCGGGAATTAAAGGCACCAAGGGCAGCCCAGGAAACATCAAGGACCAGCCGAGGCCAGCCTT
CTCCGCCATTCGGCGGAACCCCCCAATGGGGGGCAACGTGGTCATCTTCGACACGGTCATCACCAACCAG
GAAGAACCGTACCAGAACCACTCCGGCCGATTCGTCTGCACTGTACCCGGCTACTACTACTTCACCTTCC
AGGTGCTGTCCCAGTGGGAAATCTGCCTGTCCATCGTCTCCTCCTCAAGGGGCCAGGTCCGACGCTCCCT
GGGCTTCTGTGACACCACCAACAAGGGGCTCTTCCAGGTGGTGTCAGGGGGCATGGTGCTTCAGCTGCAG
CAGGGTGACCAGGTCTGGGTTGAAAAAGACCCCAAAAAGGGTCACATTTACCAGGGCTCTGAGGCCGACA
GCGTCTTCAGCGGCTTCCTCATCTTCCCATCTGCCTGA

Translation (245 aa):
MEGPRGWLVLCVLAISLASMVTEDLCRAPDGKKGEAGRPGRRGRPGLKGEQGEPGAPGIRTGIQGLKGDQ
GEPGPSGNPGKVGYPGPSGPLGARGIPGIKGTKGSPGNIKDQPRPAFSAIRRNPPMGGNVVIFDTVITNQ
EEPYQNHSGRFVCTVPGYYYFTFQVLSQWEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQ
QGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFPSA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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