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Report for CCDS22596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22596.1 Public Mus musculus 8 Matcap1 23 108 98 CCDS HistoryNCBI Gene:74356Re-query CCDS DB by CCDS ID:22596.1Re-query CCDS DB by GeneID:74356See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014981.7 ENSMUSP00000014981.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014981.7Link to Ensembl Protein Viewer:ENSMUSP00000014981.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000014981Re-query CCDS DB by Protein ID:ENSMUSP00000014981
Original member Current member EBI ENSMUST00000171788.7 ENSMUSP00000128530.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171788.7Link to Ensembl Protein Viewer:ENSMUSP00000128530.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171788Re-query CCDS DB by Protein ID:ENSMUSP00000128530
Original member Current member EBI ENSMUST00000212922.1 ENSMUSP00000148562.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212922.1Link to Ensembl Protein Viewer:ENSMUSP00000148562.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212922Re-query CCDS DB by Protein ID:ENSMUSP00000148562
Original member Current member EBI ENSMUST00000212219.1 ENSMUSP00000148836.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212219.1Link to Ensembl Protein Viewer:ENSMUSP00000148836.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212219Re-query CCDS DB by Protein ID:ENSMUSP00000148836
Original member Current member NCBI NM_001166394.1 NP_001159866.1 Accepted alive Link to Nucleotide Sequence:NM_001166394.1Link to Protein Sequence:NP_001159866.1Re-query CCDS DB by Nucleotide ID:NM_001166394Re-query CCDS DB by Protein ID:NP_001159866Link to BLAST:NP_001159866.1
Original member Current member NCBI NM_028888.2 NP_083164.1 Accepted alive Link to Nucleotide Sequence:NM_028888.2Link to Protein Sequence:NP_083164.1Re-query CCDS DB by Nucleotide ID:NM_028888Re-query CCDS DB by Protein ID:NP_083164Link to BLAST:NP_083164.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159866.1 467 Q810A5 467 100% 0 0
NP_083164.1 467 Q810A5 467 100% 0 0

Chromosomal Locations for CCDS 22596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105281980 105282144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105282987 105283084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105283175 105283480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105284666 105284798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105285030 105285173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105285256 105285813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGTGCTGGACTCGGGGACACAGGTGTATGAGCAGGCACCCCCCAGGCCCCCTGCCGGTTCCCCATCTC
AGCACCATAAGCTGAAGCCCTCAAACGGAAATGGGCCACCCCTGTACCCCTGGCCTGAGTCCCTGGGGAT
GCCCTTGGCTCTGGCAGTCCCTTCAGCACTGCAGCAGCAGACTATGTGGCAGACCTTCTCAAAGCTGCAC
TTGGAGCAGAGTAGCCACATGCGTCGCAGCGAGAGCACCTACAGTGTAAATAGTACTGGCCGGCGGGGGC
GTGGTAAAGCCCCGATTGGACGGGGATGCGATCCAGGAGGGACCCTACGGCCTGCAGCCTCCTTACCTCA
CATTGCTAAGATTCGAAAGGATGTAGGCAGTAGTAGCAGCAAGAGCCCCTGTATGTTGGTGGCCCTGCGG
CCAACTAACATGGACCAGGAACGGGAAAAGTTCTTCCAGTCTCATTATACCTACAATCCACAGTTCGAGT
ATCAGGAACCGATGCCAATGAGTGTGCTGGAGAAGTACCAGGAGGCCTCTGCGCAATTCATGAATCAGGC
AGTTGGCATCATTGAGGCTGTCCTGGAGAAGTTTGGCACTTATGAAAACTTTGAGGCTGCCACAGGGGGC
CAGCTGCTGACCAAGTGCCAAATTTGGTCCACCGTGCGCAAATACATGCAGAAGGAAGGCTGTGTTGGGG
AGATTGTGGTACAGCTGAGTGAAGATCTACTGTCCCAGGCTGTGATGATGGTGGAGAACAGCCGACCCAC
ACTGGCCATCAACTTGACTGGAGCCCGCCAGTACTGGTTGGAGGGCATGCTGCGGCACGAGATAGGCACC
CACTACCTGCGTGGTGTGAATAATTCGCGGCAACCGTGGCACAGCACTGAAGGCAGATTGCAGTACGGCC
TTCAGCCAGCCAACCCTACTGAGGAGGGCCTGGCTAGCCTGCATAGTGTGCTGTTTCGAAAGCAACCATT
CCTGTGGCGCGCCGCCCTGCTCTACTACACCATCCACCAGGCGGCGCACATGTCCTTCCGCCAGCTCTTC
CAGGATCTGGCGCAGTACGTGCAGGACGAGGGTGTACGCTGGGAGTACTGCGTCCGTGCCAAGCGAGGAC
AGACGGATACCTCCCAGCCAGGCTGCTTCAGCAAGGACCAGGTGTACCTGGATGGCATTTTGCGCATCCT
ACGGCACCGGCACACCATTGATTTCCAGCTGCTGACCTCGCTGGGCAAGGTCTCCTATGAAGACGTGGAA
CAACTGCGGCCCTACGGGGTGCTAGACAATACCAGAGTGCCCCACTTCATGAAGGACTTGGAACGTTACC
GGCAGCAGCTGGAACACATCATGACCACCAACCGGCTGGATGAAGCGGAGCTGGGCCGCCTGCTGCCTGA
CTGA

Translation (467 aa):
MVLDSGTQVYEQAPPRPPAGSPSQHHKLKPSNGNGPPLYPWPESLGMPLALAVPSALQQQTMWQTFSKLH
LEQSSHMRRSESTYSVNSTGRRGRGKAPIGRGCDPGGTLRPAASLPHIAKIRKDVGSSSSKSPCMLVALR
PTNMDQEREKFFQSHYTYNPQFEYQEPMPMSVLEKYQEASAQFMNQAVGIIEAVLEKFGTYENFEAATGG
QLLTKCQIWSTVRKYMQKEGCVGEIVVQLSEDLLSQAVMMVENSRPTLAINLTGARQYWLEGMLRHEIGT
HYLRGVNNSRQPWHSTEGRLQYGLQPANPTEEGLASLHSVLFRKQPFLWRAALLYYTIHQAAHMSFRQLF
QDLAQYVQDEGVRWEYCVRAKRGQTDTSQPGCFSKDQVYLDGILRILRHRHTIDFQLLTSLGKVSYEDVE
QLRPYGVLDNTRVPHFMKDLERYRQQLEHIMTTNRLDEAELGRLLPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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