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Report for CCDS22485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22485.1 Public Mus musculus 8 Rtbdn 23 108 98 CCDS HistoryNCBI Gene:234542Re-query CCDS DB by CCDS ID:22485.1Re-query CCDS DB by GeneID:234542See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067472.13 ENSMUSP00000070558.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067472.13Link to Ensembl Protein Viewer:ENSMUSP00000070558.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067472Re-query CCDS DB by Protein ID:ENSMUSP00000070558
Original member Current member EBI ENSMUST00000109740.8 ENSMUSP00000105362.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109740.8Link to Ensembl Protein Viewer:ENSMUSP00000105362.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109740Re-query CCDS DB by Protein ID:ENSMUSP00000105362
Original member Current member EBI ENSMUST00000121880.7 ENSMUSP00000113982.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121880.7Link to Ensembl Protein Viewer:ENSMUSP00000113982.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121880Re-query CCDS DB by Protein ID:ENSMUSP00000113982
Original member Current member NCBI NM_001357326.1 NP_001344255.1 Accepted alive Link to Nucleotide Sequence:NM_001357326.1Link to Protein Sequence:NP_001344255.1Re-query CCDS DB by Nucleotide ID:NM_001357326Re-query CCDS DB by Protein ID:NP_001344255Link to BLAST:NP_001344255.1
Original member Current member NCBI NM_001357328.1 NP_001344257.1 Accepted alive Link to Nucleotide Sequence:NM_001357328.1Link to Protein Sequence:NP_001344257.1Re-query CCDS DB by Nucleotide ID:NM_001357328Re-query CCDS DB by Protein ID:NP_001344257Link to BLAST:NP_001344257.1
Original member Current member NCBI NM_144929.3 NP_659178.1 Accepted alive Link to Nucleotide Sequence:NM_144929.3Link to Protein Sequence:NP_659178.1Re-query CCDS DB by Nucleotide ID:NM_144929Re-query CCDS DB by Protein ID:NP_659178Link to BLAST:NP_659178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344255.1 247 Q8QZY4 247 100% 0 0
NP_001344257.1 247 Q8QZY4 247 100% 0 0
NP_659178.1 247 Q8QZY4 247 100% 0 0

Chromosomal Locations for CCDS 22485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84950508 84950676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84952644 84952788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84952913 84953023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84955007 84955103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84956006 84956227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCCCACGAAGGCCACTCTCAACACAGCGGCCTGGTCTGGGCCCTGCGACCGATCCTGGCTTGGATCT
TCTTGGTGGCCTGTGGATGGAGTCACCCACTGCAGACTAGGTCCTGGGGACACCCTGGACTGGCAGCCAA
GGTGCGCACAGGCCAGCTGCAGCCGGCAGGGCACCCTCAGTCCTCGGTTCTACCATCATACCCAAGGATC
CAAGTTCCTGGCTCACAGACACCACCAGTGCCAGTGCCTTGCTGTACTGCAGAGATAGACAGACCAGAGA
GCCTTCTAGAGAGCTGCGGGGCACCAAGCCCAGAATGTGAATTCTTCCTGGGACAACTTCAAGGAGCCCT
TCGCGATCGCTTCCACCCACAGCTCTTCGGGGCACGCCCAGTGCAGCCTCTCTGCCCAGAGCTCTGCCAG
ATTTGGTTCACCACCTGCCAAGCAGATTTTATTTGTGGCCCGACTTGGCTGCAGTCCTCTGGAGAGAGAG
GCTGTGAGCCCAGCTGCCGCACCTATGGGCAGACCTTCGCCAACGCCACAGATCTGTGTCACTCTGTTTT
GGGTCATGTCCTGCGGGTAGCAGCTCCAGGTTCCAGTCACTGCCTCAACGTCTCCATCTCCTCTCCAGGA
GCGCGCCGCCGCCCTCGTGCCTGGATTTCAAATGTTGTAGGCAGTGGTAGTGGCAGCGGCAGCGGCGACA
GCCCCGAGCCAATGTTTGGCTTTCAATACGTGTCCCTTCCCTAG

Translation (247 aa):
MAHEGHSQHSGLVWALRPILAWIFLVACGWSHPLQTRSWGHPGLAAKVRTGQLQPAGHPQSSVLPSYPRI
QVPGSQTPPVPVPCCTAEIDRPESLLESCGAPSPECEFFLGQLQGALRDRFHPQLFGARPVQPLCPELCQ
IWFTTCQADFICGPTWLQSSGERGCEPSCRTYGQTFANATDLCHSVLGHVLRVAAPGSSHCLNVSISSPG
ARRRPRAWISNVVGSGSGSGSGDSPEPMFGFQYVSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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