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Report for CCDS22063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22063.1 Public Mus musculus 8 Mcoln1 23 108 98 CCDS HistoryNCBI Gene:94178Re-query CCDS DB by CCDS ID:22063.1Re-query CCDS DB by GeneID:94178See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004683.12 ENSMUSP00000004683.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004683.12Link to Ensembl Protein Viewer:ENSMUSP00000004683.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004683Re-query CCDS DB by Protein ID:ENSMUSP00000004683
Original member Current member NCBI NM_053177.1 NP_444407.1 Accepted alive Link to Nucleotide Sequence:NM_053177.1Link to Protein Sequence:NP_444407.1Re-query CCDS DB by Nucleotide ID:NM_053177Re-query CCDS DB by Protein ID:NP_444407Link to BLAST:NP_444407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444407.1 580 Q99J21-1 580 100% 0 0

Chromosomal Locations for CCDS 22063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3500597 3500627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3505738 3505943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3507149 3507316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3507401 3507566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3508319 3508427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3508684 3508780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3509136 3509235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3510320 3510426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3510540 3510689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3510814 3510915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3511688 3511810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3512650 3512865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3514783 3514913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3515014 3515050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGCCACCCCGGCGGGCCGGCGCGCCTCAGAGACTGAGCGGCTGCTGACCCCCAATCCTGGGTATGGGA
CCCAGGTGGGGACCTCACCAGCCCCAACAACCCCCACAGAAGAGGAAGACCTCCGCCGCCGCCTCAAGTA
CTTCTTTATGAGCCCATGTGACAAGTTCCGGGCCAAAGGCCGCAAGCCCTGCAAGCTGATGCTGCAGGTG
GTCAAGATCTTGGTGGTCACTGTGCAGCTCATTCTCTTTGGGCTCAGCAACCAGCTGGTGGTGACATTCC
GGGAAGAGAACACCATTGCCTTCCGACATCTCTTCCTGCTGGGTTACTCTGATGGGTCTGATGACACCTT
TGCAGCCTACACACAGGAGCAGCTCTACCAAGCCATCTTCTATGCTGTGGACCAGTACCTGATACTACCT
GAGATATCCCTGGGCCGGTATGCCTATGTCCGTGGTGGGGGTGGGCCTTGGGCCAATGGATCAGCTTTGG
CTCTCTGCCAGCGGTACTACCACCGTGGCCATGTGGACCCAGCCAATGATACCTTTGACATTGATCCAAG
GGTAGTCACTGACTGTATCCAGGTGGATCCTCCTGACAGACCCCCTGACATCCCCAGTGAGGACTTGGAC
TTCTTGGATGGCAGCGCCAGTTACAAGAACCTCACACTGAAATTCCACAAGCTGATCAACGTCACCATCC
ACTTCCAGCTGAAGACAATTAACCTGCAGAGCCTCATCAACAATGAGATCCCTGATTGTTACACCTTCAG
TATCCTGATCACATTTGACAATAAAGCGCACAGTGGGCGAATCCCCATCCGCCTGGAGACCAAGACCCAC
ATCCAGGAGTGCAAACACCCCAGTGTCTCCAGACATGGAGACAACAGCTTCCGGCTTCTGTTTGATGTGG
TGGTTATCCTCACCTGCTCCCTGTCCTTCCTGCTGTGCGCCCGCTCACTGCTCCGTGGCTTCCTGCTGCA
GAACGAGTTTGTTGTATTCATGTGGCGGCGGCGGGGTCGGGAAATCAGCCTCTGGGAACGGCTGGAGTTT
GTCAATGGCTGGTACATCCTGCTGGTCACCAGTGACGTGCTCACCATCTCGGGGACTGTCATGAAGATTG
GCATTGAGGCAAAGAACCTAGCCAGCTATGATGTCTGCAGTATTCTCTTGGGTACCTCCACTCTGCTAGT
CTGGGTCGGTGTCATTCGCTACCTGACATTTTTCCACAAGTACAACATCTTGATTGCCACGTTGCGAGTG
GCACTGCCCAGTGTCATGCGTTTCTGCTGCTGTGTGGCTGTCATCTACCTGGGCTATTGCTTCTGTGGCT
GGATCGTTCTAGGGCCCTACCATGTGAAGTTCCGCTCGCTGTCCATGGTTTCTGAGTGTCTGTTCTCACT
CATCAACGGAGACGACATGTTTGTGACGTTCGCGGCCATGCAGGCCCAGCAGGGTCACAGCAGCCTGGTG
TGGCTCTTCTCCCAGCTGTACCTCTACTCCTTCATCAGCCTCTTCATCTACATGGTGCTGAGCCTCTTCA
TTGCACTCATCACCGGCGCCTATGACACCATCAAGCACCCAGGAGGTACTGGCACAGAGAAGAGTGAGCT
CCAGGCCTACATCGAGCAGTGCCAGGATAGCCCCACATCTGGCAAGTTCCGTCGTGGCAGTGGCTCAGCT
TGTAGCCTTTTCTGCTGCTGTGGAAGGGACTCCCCGGAGGACCATTCGCTGCTGGTGAACTGA

Translation (580 aa):
MATPAGRRASETERLLTPNPGYGTQVGTSPAPTTPTEEEDLRRRLKYFFMSPCDKFRAKGRKPCKLMLQV
VKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAYTQEQLYQAIFYAVDQYLILP
EISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPANDTFDIDPRVVTDCIQVDPPDRPPDIPSEDLD
FLDGSASYKNLTLKFHKLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTH
IQECKHPSVSRHGDNSFRLLFDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFMWRRRGREISLWERLEF
VNGWYILLVTSDVLTISGTVMKIGIEAKNLASYDVCSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRV
ALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFRSLSMVSECLFSLINGDDMFVTFAAMQAQQGHSSLV
WLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIKHPGGTGTEKSELQAYIEQCQDSPTSGKFRRGSGSA
CSLFCCCGRDSPEDHSLLVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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