NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22034.1 Public Mus musculus 7 Ins2 23 108 98 CCDS HistoryNCBI Gene:16334Re-query CCDS DB by CCDS ID:22034.1Re-query CCDS DB by GeneID:16334See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000220.2 ENSMUSP00000000220.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000220.2Link to Ensembl Protein Viewer:ENSMUSP00000000220.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000220Re-query CCDS DB by Protein ID:ENSMUSP00000000220
Original member Current member EBI ENSMUST00000105932.1 ENSMUSP00000101552.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105932.1Link to Ensembl Protein Viewer:ENSMUSP00000101552.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105932Re-query CCDS DB by Protein ID:ENSMUSP00000101552
Original member Current member EBI ENSMUST00000105933.7 ENSMUSP00000101553.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105933.7Link to Ensembl Protein Viewer:ENSMUSP00000101553.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105933Re-query CCDS DB by Protein ID:ENSMUSP00000101553
Original member Current member EBI ENSMUST00000105934.7 ENSMUSP00000101554.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105934.7Link to Ensembl Protein Viewer:ENSMUSP00000101554.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105934Re-query CCDS DB by Protein ID:ENSMUSP00000101554
Original member Current member EBI ENSMUST00000210288.1 ENSMUSP00000147425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210288.1Link to Ensembl Protein Viewer:ENSMUSP00000147425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210288Re-query CCDS DB by Protein ID:ENSMUSP00000147425
Original member Current member NCBI NM_001185083.2 NP_001172012.1 Accepted alive Link to Nucleotide Sequence:NM_001185083.2Link to Protein Sequence:NP_001172012.1Re-query CCDS DB by Nucleotide ID:NM_001185083Re-query CCDS DB by Protein ID:NP_001172012Link to BLAST:NP_001172012.1
Original member Current member NCBI NM_001185084.2 NP_001172013.1 Accepted alive Link to Nucleotide Sequence:NM_001185084.2Link to Protein Sequence:NP_001172013.1Re-query CCDS DB by Nucleotide ID:NM_001185084Re-query CCDS DB by Protein ID:NP_001172013Link to BLAST:NP_001172013.1
Original member Current member NCBI NM_008387.5 NP_032413.1 Accepted alive Link to Nucleotide Sequence:NM_008387.5Link to Protein Sequence:NP_032413.1Re-query CCDS DB by Nucleotide ID:NM_008387Re-query CCDS DB by Protein ID:NP_032413Link to BLAST:NP_032413.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172012.1 110 P01326 110 100% 0 0
NP_001172013.1 110 P01326 110 100% 0 0
NP_032413.1 110 P01326 110 100% 0 0

Chromosomal Locations for CCDS 22034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142678713 142678858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142679347 142679533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGCCCTGTGGATGCGCTTCCTGCCCCTGCTGGCCCTGCTCTTCCTCTGGGAGTCCCACCCCACCCAGG
CTTTTGTCAAGCAGCACCTTTGTGGTTCCCACCTGGTGGAGGCTCTCTACCTGGTGTGTGGGGAGCGTGG
CTTCTTCTACACACCCATGTCCCGCCGTGAAGTGGAGGACCCACAAGTGGCACAACTGGAGCTGGGTGGA
GGCCCGGGAGCAGGTGACCTTCAGACCTTGGCACTGGAGGTGGCCCAGCAGAAGCGTGGCATTGTAGATC
AGTGCTGCACCAGCATCTGCTCCCTCTACCAGCTGGAGAACTACTGCAACTAG

Translation (110 aa):
MALWMRFLPLLALLFLWESHPTQAFVKQHLCGSHLVEALYLVCGERGFFYTPMSRREVEDPQVAQLELGG
GPGAGDLQTLALEVAQQKRGIVDQCCTSICSLYQLENYCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH