NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21986.1 Public Mus musculus 7 Urah 23 108 98 CCDS HistoryNCBI Gene:76974Re-query CCDS DB by CCDS ID:21986.1Re-query CCDS DB by GeneID:76974See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026554.10 ENSMUSP00000026554.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026554.10Link to Ensembl Protein Viewer:ENSMUSP00000026554.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026554Re-query CCDS DB by Protein ID:ENSMUSP00000026554
Original member Current member EBI ENSMUST00000185612.2 ENSMUSP00000140559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185612.2Link to Ensembl Protein Viewer:ENSMUSP00000140559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185612Re-query CCDS DB by Protein ID:ENSMUSP00000140559
Original member Current member EBI ENSMUST00000211372.1 ENSMUSP00000147522.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211372.1Link to Ensembl Protein Viewer:ENSMUSP00000147522.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211372Re-query CCDS DB by Protein ID:ENSMUSP00000147522
Original member Current member NCBI NM_001359805.1 NP_001346734.1 Accepted alive Link to Nucleotide Sequence:NM_001359805.1Link to Protein Sequence:NP_001346734.1Re-query CCDS DB by Nucleotide ID:NM_001359805Re-query CCDS DB by Protein ID:NP_001346734Link to BLAST:NP_001346734.1
Original member Current member NCBI NM_029821.3 NP_084097.1 Accepted alive Link to Nucleotide Sequence:NM_029821.3Link to Protein Sequence:NP_084097.1Re-query CCDS DB by Nucleotide ID:NM_029821Re-query CCDS DB by Protein ID:NP_084097Link to BLAST:NP_084097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346734.1 118 Q9CRB3 118 100% 0 0
NP_084097.1 118 Q9CRB3 118 100% 0 0

Chromosomal Locations for CCDS 21986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140835621 140835751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140836747 140836882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140837686 140837775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGCTACCGAGAGCAGTCCCCTGACTACTCACGTTCTAGACACTGCCTCAGGGCTCCCTGCCCAAGGCC
TCTGCCTCCGGCTGTCCCGCCTGGAGGCCCCCTGCCAGCAGTGGATGGAGCTGAGGACAAGCTACACAAA
CCTGGACGGTCGCTGTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTGTTCTTC
GACACAGAGCGCTACTGGAAAGAGCGGGGTCAAGAGAGCTTTTACCCCTATGTAGAGGTGGTTTTCACTA
TTACAAAGGAGACCCAGAAGTTCCACGTACCTCTGCTGCTGAGCCCATGGTCCTACACCACCTACCGGGG
GAGTTAA

Translation (118 aa):
MATESSPLTTHVLDTASGLPAQGLCLRLSRLEAPCQQWMELRTSYTNLDGRCPGLLTPSQIKPGTYKLFF
DTERYWKERGQESFYPYVEVVFTITKETQKFHVPLLLSPWSYTTYRGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH