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Report for CCDS21825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21825.1 Public Mus musculus 7 Lat 23 108 98 CCDS HistoryNCBI Gene:16797Re-query CCDS DB by CCDS ID:21825.1Re-query CCDS DB by GeneID:16797See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21825.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032997.7 ENSMUSP00000032997.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032997.7Link to Ensembl Protein Viewer:ENSMUSP00000032997.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032997Re-query CCDS DB by Protein ID:ENSMUSP00000032997
Original member Current member NCBI NM_010689.3 NP_034819.1 Accepted alive Link to Nucleotide Sequence:NM_010689.3Link to Protein Sequence:NP_034819.1Re-query CCDS DB by Nucleotide ID:NM_010689Re-query CCDS DB by Protein ID:NP_034819Link to BLAST:NP_034819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034819.1 242 O54957 242 100% 0 0

Chromosomal Locations for CCDS 21825.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126364203 126364300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126364398 126364460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126364559 126364621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126367876 126367970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126368046 126368106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126368186 126368215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126368299 126368363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126368495 126368582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126368802 126368836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126368942 126368969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126369148 126369250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGAAGCAGACGCCTTGAGCCCGGTGGGGCTGGGCCTCCTGCTGCTGCCCTTCTTGGTCACGCTCCTGG
CTGCCCTGTGCGTGCGCTGCCGTGAGTTGCCAGTCTCCTATGACAGCACTTCCACAGAGAGTTTGTACCC
AAGAAGCATCCTCATCAAGCCACCTCAAATAACCGTCCCCCGAACACCTGCTGTTTCCTACCCTCTAGTC
ACTTCCTTCCCACCCCTGAGGCAGCCAGACCTGCTCCCCATCCCGAGATCCCCACAGCCCCTTGGGGGTT
CCCATCGGATGCCATCTTCCCAGCAGAATTCAGATGATGCCAACAGTGTGGCAAGCTACGAGAACCAGGA
GCCAGCCTGTAAGAATGTGGATGCAGATGAGGATGAAGACGACTATCCCAACGGCTACCTAGTGGTGCTG
CCTGACAGTAGTCCTGCTGCCGTCCCTGTTGTCTCCTCTGCTCCTGTGCCTAGCAACCCTGACCTTGGAG
ACAGTGCCTTCTCTGTGGAGTCGTGTGAAGATTACGTGAATGTTCCTGAGAGTGAGGAGAGCGCAGAGGC
GTCTCTGGATGGGAGCCGGGAGTATGTGAATGTGTCCCCAGAGCAGCAGCCAGTGACCAGGGCTGAGCTG
GCCTCTGTGAACTCCCAGGAGGTGGAAGACGAAGGAGAAGAGGAAGGGGTGGATGGAGAGGAAGCTCCTG
ACTATGAGAATCTGCAGGAGCTTAACTGA

Translation (242 aa):
MEADALSPVGLGLLLLPFLVTLLAALCVRCRELPVSYDSTSTESLYPRSILIKPPQITVPRTPAVSYPLV
TSFPPLRQPDLLPIPRSPQPLGGSHRMPSSQQNSDDANSVASYENQEPACKNVDADEDEDDYPNGYLVVL
PDSSPAAVPVVSSAPVPSNPDLGDSAFSVESCEDYVNVPESEESAEASLDGSREYVNVSPEQQPVTRAEL
ASVNSQEVEDEGEEEGVDGEEAPDYENLQELN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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