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Report for CCDS21505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21505.1 Public Mus musculus 7 Fam168a 23 108 98 CCDS HistoryNCBI Gene:319604Re-query CCDS DB by CCDS ID:21505.1Re-query CCDS DB by GeneID:319604See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049053.8 ENSMUSP00000038233.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049053.8Link to Ensembl Protein Viewer:ENSMUSP00000038233.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049053Re-query CCDS DB by Protein ID:ENSMUSP00000038233
Original member Current member EBI ENSMUST00000207875.1 ENSMUSP00000146851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207875.1Link to Ensembl Protein Viewer:ENSMUSP00000146851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207875Re-query CCDS DB by Protein ID:ENSMUSP00000146851
Original member Current member EBI ENSMUST00000216021.1 ENSMUSP00000149345.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216021.1Link to Ensembl Protein Viewer:ENSMUSP00000149345.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216021Re-query CCDS DB by Protein ID:ENSMUSP00000149345
Original member Current member NCBI NM_001362170.1 NP_001349099.1 Accepted alive Link to Nucleotide Sequence:NM_001362170.1Link to Protein Sequence:NP_001349099.1Re-query CCDS DB by Nucleotide ID:NM_001362170Re-query CCDS DB by Protein ID:NP_001349099Link to BLAST:NP_001349099.1
Original member Current member NCBI NM_178764.4 NP_848879.1 Accepted alive Link to Nucleotide Sequence:NM_178764.4Link to Protein Sequence:NP_848879.1Re-query CCDS DB by Nucleotide ID:NM_178764Re-query CCDS DB by Protein ID:NP_848879Link to BLAST:NP_848879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349099.1 235 Q8BGZ2-2 235 100% 0 0
NP_848879.1 235 Q8BGZ2-2 235 100% 0 0

Chromosomal Locations for CCDS 21505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100786822 100786891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100812920 100813000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100824132 100824257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100831328 100831470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100834009 100834183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100835327 100835439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGAACCCTGTTTATAGCCCCGTGCAACCTGGGGCTCCTTATGGCAACCCTAAGAACATGGCCTACACTG
GTTACCCCACAGCATACCCGGCAGCTGCTCCTGCCTACAACCCCAGCCTGTACCCGACCAACAGCCCTAG
TTATGCTCCAGCCACTCTGCTGATGAAACAAGCCTGGCCACAGAACTCGTCTTCCTGTGGCACTGAAGGC
ACCTTCCACCTCCCAGTGGACACCGGGACCGAGAACCGAACTTACCAGGCATCCTCTGCGGCTTTCAGAT
ATACCGCAGGGACACCATACAAGGTCCCACCGACCCAGAGTAATACTGCTCCACCCCCCTACTCCCCATC
ACCCAATCCCTATCAGACGGCCATGTATCCAATCAGAAGTGCCTATCCCCAGCAGAATCTGTATGCCCAG
GGAGCCTACTACACACAACCTGTGTATGCTGCCCAGCCCCATGTCATCCACCACACCACGGTTGTCCAGC
CCAACAGCATTCCCTCTGCCATCTACCCAGCTCCTGTTGCTGCCCCCAGGACCAATGGTGTGGCCATGGG
CATGGTGGCAGGCACCACCATGGCAATGTCAGCAGGTACCCTGCTGACCACACCCCAGCACACTGCAATT
GGGGCACACCCTGTCTCCATGCCCACATACAGGGCCCAAGGAACCCCTGCGTACAGCTACGTGCCCCCGC
ACTGGTAA

Translation (235 aa):
MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPATLLMKQAWPQNSSSCGTEG
TFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQ
GAYYTQPVYAAQPHVIHHTTVVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAI
GAHPVSMPTYRAQGTPAYSYVPPHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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