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Report for CCDS21279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21279.1 Public Mus musculus 7 Sergef 23 108 98 CCDS HistoryNCBI Gene:27414Re-query CCDS DB by CCDS ID:21279.1Re-query CCDS DB by GeneID:27414See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21279.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033127.11 ENSMUSP00000033127.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033127.11Link to Ensembl Protein Viewer:ENSMUSP00000033127.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033127Re-query CCDS DB by Protein ID:ENSMUSP00000033127
Original member Current member NCBI NM_013789.2 NP_038817.1 Accepted alive Link to Nucleotide Sequence:NM_013789.2Link to Protein Sequence:NP_038817.1Re-query CCDS DB by Nucleotide ID:NM_013789Re-query CCDS DB by Protein ID:NP_038817Link to BLAST:NP_038817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038817.1 464 Q80YD6 464 100% 0 0

Chromosomal Locations for CCDS 21279.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46443189 46443535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46515668 46515704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46590607 46590773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46614618 46614776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46618696 46618758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46621561 46621674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46626209 46626269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46632660 46632754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46633755 46633910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46635421 46635556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46639713 46639772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGCGCGGGAGTCCTGCGCCTCCGAGACTGTCTCTGCCGCTGCTGTGCTCTTCGCCTGGGGTGCAAACA
GCTATGGGCAACTTGGCCTTGGCCATAAGGAAGATGTGTTTCTGCCCCAGCAACTGAGTGACTTCTGTCA
AGCTGGGTGTATCAAGAGTGTCACAGGAGGAGGAGGGCATTCTGCAGTTGTCACAGATGGAGGAGATCTT
TTTGTTTGTGGCCTGAATAAAGATGGGCAGTTGGGGCTTGGTCACACAGAGGAAGTTCTGCGTTTTACCA
TCTGCAAGCCTCTCCGTGGTTGTCCCATCCGACAGGTGGCCTGTGGCTGGGACTTCACCATCATGCTTAC
AGAAAAAGGTCAAGTTCTGTCCTGTGGATCCAATGCCTTTGGCCAGTTAGGTGTGCCTCACGGCCCTCGC
AAATGCGTGGTCCCCCAGGCCATTGAGTGCCTGAGAGAGAAGGTTGTTTGTGTCGCTGCTGGACTGAGGC
ATGCCTTAGCCACTACAGCGACTGGCAGTGTGTTCCAGTGGGGGACTGGCTTGGCATCTTCTGGTCGACG
CCTGTGCCCTGGGCAGAATCTCCCACTGTTTTTGACAGCAAAGGAACCCAGCAGAGTGACAGGCCTGGAG
AATTCTACAGCAGTGTGTGCTGTTGCAGGATCTGACCACTCGGCCTCATTAACAGATACAGGAGAGCTGT
ACGTCTGGGGCCGTAACAAGCATGGGCAGCTGGCCTCCCGCGCTGTGTTCCTTCCTCTGCCCCAGAGAAT
AGAAGCACATTACTTTCAGGATGAAAAGGTCACTGCTGTCTGGAGTGGCTGGACACACCTGGTTGCTAAG
ACAGAAACTGGCAAGGTGTTTACCTGGGGTCGAGCAGACTATGGTCAGCTAGGGAGGAGGTTGGAGCCTC
CTGAAGCTCAGAAACCTGTAGAGCAAGACTCATCGCTCGCCTTCCAGGGGCCACAGAACAGTGTGCCTTC
ACCTCTGCATTGCCTGACAGGAGCAACAGAGATTTCTTGTGGCTCGGAGCACAACTTGGCAGTAATTAGG
GACAAGTGCTGCTCCTGGGGTTGGAACGAACACGGCATGTGTGGGGATGGCACTGAGTCCAATGTCTGGA
CTCCAACTCCAGTGCAGGCTCTGCCACCATCACCATCAAGACTCCTCCTCGTGGGCTGTGGGGCTGGCCA
CTCCTTGGCCGTATGTCAGCTGCCAGCACACCCTGTGCCATGCCAGGATCTCAAGGTCACCTGCCCTCTC
CCAGATGACACAGAGAACACTGAATCTCAGGGTGCCGTGGACAGAGACAGACTGGAAGGAGAGACGATCA
GTGACCTCAACCCAGACAGGACGAGAAATGGGGGTGGGGGGTGTGAGAGCGAGACCGTTCAATAA

Translation (464 aa):
MARESCASETVSAAAVLFAWGANSYGQLGLGHKEDVFLPQQLSDFCQAGCIKSVTGGGGHSAVVTDGGDL
FVCGLNKDGQLGLGHTEEVLRFTICKPLRGCPIRQVACGWDFTIMLTEKGQVLSCGSNAFGQLGVPHGPR
KCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQWGTGLASSGRRLCPGQNLPLFLTAKEPSRVTGLE
NSTAVCAVAGSDHSASLTDTGELYVWGRNKHGQLASRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAK
TETGKVFTWGRADYGQLGRRLEPPEAQKPVEQDSSLAFQGPQNSVPSPLHCLTGATEISCGSEHNLAVIR
DKCCSWGWNEHGMCGDGTESNVWTPTPVQALPPSPSRLLLVGCGAGHSLAVCQLPAHPVPCQDLKVTCPL
PDDTENTESQGAVDRDRLEGETISDLNPDRTRNGGGGCESETVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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